jr-leary7 / SCISSORSLinks
SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with an eye towards identifying rare cell types.
☆13Updated last year
Alternatives and similar repositories for SCISSORS
Users that are interested in SCISSORS are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- Methods for decontamination of single cell data☆48Updated 8 months ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Updated 5 years ago
- ☆17Updated last year
- ☆41Updated 4 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆41Updated 3 weeks ago
- ☆58Updated 2 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- scWGCNA☆61Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- ☆57Updated last year
- ☆32Updated 9 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- iterative clustering pipeline of big single cell datasets.☆34Updated last month
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year