Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
☆37Jul 29, 2025Updated 10 months ago
Alternatives and similar repositories for PertEval
Users that are interested in PertEval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆45Dec 31, 2025Updated 5 months ago
- Reproduce analyses and baselines from the State paper☆15Feb 25, 2026Updated 3 months ago
- A biologically interpretable graph neural network for multistain computational pathology - CVPR 2025☆28May 28, 2025Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆177Feb 25, 2025Updated last year
- Diffusion model for gene regulatory network inference.☆29Mar 20, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 11 months ago
- 🏃 The go-to single-cell Foundation Model☆148May 20, 2026Updated 3 weeks ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆19Dec 3, 2025Updated 6 months ago
- A model developed for the generation of scRNA-seq data☆92Jan 21, 2026Updated 4 months ago
- ☆83Jan 9, 2026Updated 5 months ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆30Sep 12, 2025Updated 9 months ago
- ☆85Jul 18, 2025Updated 10 months ago
- ☆12Oct 4, 2021Updated 4 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆175Oct 31, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Conditional out-of-distribution prediction☆63Aug 2, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆88May 6, 2026Updated last month
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆103Mar 28, 2024Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆24Aug 11, 2025Updated 10 months ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- Single-Cell (Perturbation) Model Library☆106May 5, 2026Updated last month
- ☆39Apr 16, 2025Updated last year
- ☆17Jul 12, 2024Updated last year
- ☆45Jul 16, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a dataloader to work with large single cell datasets from lamindb☆40May 20, 2026Updated 3 weeks ago
- ☆15Mar 15, 2023Updated 3 years ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆24Jan 31, 2026Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- CheMixHub: Datasets and Benchmarks for Chemical Mixture Property Prediction☆31Feb 27, 2026Updated 3 months ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34May 22, 2026Updated 3 weeks ago
- ☆62Apr 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- Transformer Based Embeddings of Wasserstein Distance☆26Feb 18, 2026Updated 3 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆255Feb 26, 2026Updated 3 months ago
- MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network …☆12Dec 27, 2022Updated 3 years ago
- ☆173Jan 30, 2026Updated 4 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆77Feb 24, 2025Updated last year
- ☆98Aug 12, 2024Updated last year