Alternatives and similar repositories for CytoSig_prediction

Users that are interested in CytoSig_prediction are comparing it to the libraries listed below

• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 8 months ago
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated last week
• xushiabbvie / TDtool
  ☆10Updated 7 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆16Updated 2 years ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆14Updated 5 months ago
• ChengLiLab / SCALE
  A tissue-specific single-cell biological age model
  ☆11Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• compbioNJU / CellFunTopic
  Functional Annotation for Single-Cell Transcriptomics
  ☆10Updated 11 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 7 months ago
• Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-disease
  Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level
  ☆13Updated 10 months ago
• SlavovLab / SCoPE2
  ☆18Updated last month
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• zpliulab / scGENA
  single cell Gene co-Expression Network Analysis
  ☆9Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆22Updated 2 years ago
• Coolgenome / GastricCancer
  ☆12Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆15Updated 3 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆23Updated this week
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated 2 years ago
• eudoraleer / HTCA
  HTCA Analysis Tools
  ☆5Updated 2 years ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
  Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…
  ☆9Updated 5 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago