R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA-seq data.
☆14Oct 17, 2024Updated last year
Alternatives and similar repositories for ConDecon
Users that are interested in ConDecon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 3 years ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆25Jun 15, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Implementation of Mapper Algorithm☆14Dec 19, 2016Updated 9 years ago
- An R package for feature selection in topological spaces.☆11Aug 12, 2021Updated 4 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 10 years ago
- ☆24Jul 9, 2025Updated last year
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 5 months ago
- Toolkit for metacell analysis☆24Aug 8, 2024Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆34Feb 25, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- ☆55Oct 9, 2025Updated 10 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 8 months ago
- scAB detects multiresolution cell states with clinical significance☆23Nov 14, 2022Updated 3 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- A utility for sending emails with attachments. Currently only Gmail is supported.☆20Jan 30, 2022Updated 4 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Unified access to several second-generation deconvolution methods☆110Updated this week
- ☆49Oct 29, 2025Updated 9 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- ☆18Dec 4, 2025Updated 8 months ago
- ☆51Feb 7, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- ☆18Jan 23, 2026Updated 6 months ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- ☆23Jul 15, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 2 months ago
- ☆25Nov 25, 2025Updated 8 months ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- ☆25Jun 6, 2025Updated last year
- Example data for R/qtl2☆13May 29, 2026Updated 2 months ago
- ☆25Apr 3, 2025Updated last year
- ☆21Mar 4, 2024Updated 2 years ago