CamaraLab / ConDecon
R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA-seq data.
☆12Updated 5 months ago
Alternatives and similar repositories for ConDecon:
Users that are interested in ConDecon are comparing it to the libraries listed below
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆9Updated 9 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- ☆18Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- ☆16Updated 10 months ago
- ☆17Updated last year
- Publically accessible code for DIISCO method☆10Updated 5 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- ☆12Updated 2 months ago
- ☆16Updated last month
- ☆13Updated 7 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated last month
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- ☆19Updated 11 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆19Updated 2 weeks ago
- ☆10Updated last year
- ☆16Updated last year
- ☆20Updated last year
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆17Updated 6 months ago