CamaraLab / ConDeconLinks
R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA-seq data.
☆13Updated last year
Alternatives and similar repositories for ConDecon
Users that are interested in ConDecon are comparing it to the libraries listed below
Sorting:
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- ☆18Updated 3 years ago
- ☆11Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- ☆30Updated 9 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- UHCA☆11Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 7 months ago
- ☆26Updated 2 years ago
- ☆61Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Updated last year
- ☆16Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- Computational pipeline to process EasySci-RNA data.☆22Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- ☆22Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Updated 2 years ago