CamaraLab / ConDecon
R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA-seq data.
☆11Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for ConDecon
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆44Updated 3 weeks ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆25Updated 3 weeks ago
- ☆17Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆16Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 4 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆29Updated 8 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆33Updated 5 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated 3 weeks ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Lung cancer 10X analysis☆11Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆17Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated last month
- ☆12Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated 3 weeks ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 2 weeks ago
- ☆27Updated 2 months ago