Alternatives and similar repositories for NovoBench:

Users that are interested in NovoBench are comparing it to the libraries listed below

• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆102Updated last month
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆91Updated last year
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆32Updated 2 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆57Updated 9 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆27Updated 5 months ago
• zhengkangjie / ESM-AA
  ☆66Updated last month
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆95Updated last year
• ai4protein / ProSST
  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.
  ☆100Updated last month
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆53Updated last week
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆38Updated 5 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆82Updated 3 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆54Updated 2 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆88Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆56Updated 10 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆28Updated 7 months ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆30Updated 3 weeks ago
• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆36Updated 5 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆82Updated 10 months ago
• SIAT-code / MASSA
  ☆23Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆62Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆47Updated 2 months ago
• bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
  ☆40Updated 2 years ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆34Updated 2 weeks ago
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆127Updated 3 weeks ago
• smiles724 / GNN-Bottleneck
  ☆39Updated 2 years ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆60Updated 8 months ago
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆95Updated 9 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆57Updated last year
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆44Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆30Updated 3 months ago