HelloWorldLTY / scELMoLinks
[Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
☆16Updated last month
Alternatives and similar repositories for scELMo
Users that are interested in scELMo are comparing it to the libraries listed below
Sorting:
- ☆58Updated 3 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆29Updated 3 months ago
- A model developed for the generation of scRNA-seq data☆78Updated 8 months ago
- Modeling complex perturbations with CellFlow☆95Updated last week
- Create cell sentences from sequencing data☆23Updated last year
- ☆34Updated 6 months ago
- ☆42Updated last week
- Comprehensive suite for evaluating perturbation prediction models☆100Updated last week
- Single-Cell (Perturbation) Model Library☆81Updated 2 months ago
- ☆85Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆53Updated 4 months ago
- ☆86Updated last year
- ☆17Updated 6 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆115Updated 7 months ago
- 🏃 The go-to single-cell Foundation Model☆117Updated last week
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆118Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆99Updated last year
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- ☆73Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆59Updated last year
- Diffusion model for gene regulatory network inference.☆23Updated 3 months ago
- ☆13Updated 5 months ago
- ☆56Updated last month
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆20Updated 8 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆107Updated last month