[Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
☆25Jan 31, 2026Updated 8 months ago
Alternatives and similar repositories for scELMo
Users that are interested in scELMo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 5 months ago
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆31Jul 2, 2025Updated last year
- ☆24Apr 30, 2025Updated last year
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆29Mar 20, 2026Updated 6 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 8 months ago
- Large Language Models Can Be Contextual Privacy Protection Learners☆17Oct 28, 2024Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated 3 months ago
- ☆22Feb 26, 2026Updated 7 months ago
- [Nature Communications] A foundation model for drug synergy analysis☆16Nov 17, 2025Updated 10 months ago
- ☆41Apr 16, 2025Updated last year
- 🏃 The go-to single-cell Foundation Model☆162Aug 11, 2026Updated last month
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆18Feb 23, 2026Updated 7 months ago
- Gain biological insights using LLM.☆14Jan 26, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for visualising kmers in 2D space.☆14Feb 23, 2025Updated last year
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆17Sep 10, 2026Updated 3 weeks ago
- In Silico Virtual Knockout Engine for Bulk RNA-seq Cohorts☆17Apr 2, 2026Updated 6 months ago
- ☆25Aug 18, 2026Updated last month
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- ☆116Sep 7, 2026Updated last month
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Updated this week
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆38Jul 11, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 21, 2026Updated 2 weeks ago
- LLM-Driven Multi-Agent Framework for Automated scRNA-Seq Data Analysis:The LLM-driven multi-agent framework for single-cell RNA sequencin…☆20Jun 11, 2026Updated 3 months ago
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Sep 21, 2026Updated 2 weeks ago
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- R package for transcriptomic biological age analysis☆29Sep 29, 2026Updated last week
- Single cell proteomics data processing☆33Oct 2, 2026Updated last week
- A pretrained single cell gene expression language model☆13Jun 6, 2023Updated 3 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- ☆13Aug 30, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Updated this week
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆24Oct 29, 2024Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- [ICLR 2024] FedCompass: Efficient Cross-Silo Federated Learning on Heterogeneous Client Devices Using a Computing Power-Aware Scheduler☆24Apr 24, 2024Updated 2 years ago
- ☆126Aug 18, 2025Updated last year
- scDrug: From scRNA-seq to Drug Repositioning☆46May 8, 2023Updated 3 years ago
- Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"☆22Jul 16, 2021Updated 5 years ago