[Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
☆23Jan 31, 2026Updated 2 months ago
Alternatives and similar repositories for scELMo
Users that are interested in scELMo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Jul 2, 2025Updated 9 months ago
- ☆20Apr 30, 2025Updated 11 months ago
- ☆27Oct 14, 2024Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆114Mar 27, 2026Updated last month
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pretrained single cell gene expression language model☆12Jun 6, 2023Updated 2 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- Single-cell perturbation effects prediction benchmark☆82Apr 13, 2026Updated 2 weeks ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 9 months ago
- Large Language Models Can Be Contextual Privacy Protection Learners☆16Oct 28, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆356Feb 1, 2025Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆18May 23, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆33Oct 4, 2020Updated 5 years ago
- A model developed for the generation of scRNA-seq data☆89Jan 21, 2026Updated 3 months ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- ☆96Aug 12, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- ☆17May 1, 2022Updated 3 years ago
- ☆16Sep 8, 2024Updated last year
- Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding☆17Sep 21, 2019Updated 6 years ago
- 2nd Place Solution for the Google Research - Identify Contrails to Reduce Global Warming Competition☆14Aug 15, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Calling disease-related genes☆16Apr 1, 2026Updated 3 weeks ago
- d3heatmap is a Python package to create interactive heatmaps based on d3js.☆11Sep 14, 2023Updated 2 years ago
- ☆42Jul 2, 2025Updated 9 months ago
- Course Notes for PSYC 621 (Bayesian Data Analaysis, 2019 Fall)☆15Jun 5, 2020Updated 5 years ago
- Bringing core concepts from anywidget to R☆21Aug 10, 2025Updated 8 months ago
- Transformer + GAT for RNA chemical reactivity prediction| Stanford Ribonanza☆11Jan 28, 2026Updated 3 months ago
- ☆23Jun 14, 2025Updated 10 months ago
- R package: Manifold learning in R☆13Apr 7, 2020Updated 6 years ago
- The pytorch implementation of KBGNN☆16Jan 30, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Jun 26, 2025Updated 10 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Distributed single-cell data analysis.☆39Apr 15, 2026Updated 2 weeks ago
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆22Dec 2, 2025Updated 4 months ago
- Koi Fish Pond☆14Mar 10, 2011Updated 15 years ago
- ☆12Aug 19, 2025Updated 8 months ago
- Serve LLMs on NCSA hardware. Support the best FOSS models, and the long tail on HuggingFace Hub.☆14May 8, 2024Updated last year