A Python package for jointly analyzing multimodal single-cell sequencing data
☆26Jan 17, 2025Updated last year
Alternatives and similar repositories for cobolt
Users that are interested in cobolt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- Multigrate: multiomic data integration for single-cell genomics☆32Mar 16, 2026Updated last week
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆21Jan 31, 2026Updated last month
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 5 months ago
- ☆18Jul 31, 2021Updated 4 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- ☆34Apr 15, 2025Updated 11 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- Network inference by fusing data from diverse distributions☆14Nov 25, 2016Updated 9 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- ☆140Jan 30, 2026Updated last month
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Mar 31, 2022Updated 3 years ago
- SPM in Julia☆13Sep 1, 2023Updated 2 years ago
- Code for the ICML 2023 paper "Geometric Autoencoders - What You See is What You Decode"☆17Jul 28, 2023Updated 2 years ago
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 2 months ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- Repository for the code assignment of the Deep Learning 1 course, Fall 2021 edition☆10Oct 31, 2022Updated 3 years ago
- ☆29Apr 14, 2024Updated last year
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆24Jan 26, 2024Updated 2 years ago
- R package: Manifold learning in R☆13Apr 7, 2020Updated 5 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- ☆22Jun 14, 2025Updated 9 months ago
- ☆24Mar 4, 2026Updated 2 weeks ago
- ☆12Jan 31, 2023Updated 3 years ago
- ☆13Jun 26, 2025Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 1, 2025Updated 9 months ago
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆21Dec 2, 2025Updated 3 months ago