epurdom / cobolt
A Python package for jointly analyzing multimodal single-cell sequencing data
☆20Updated 2 weeks ago
Alternatives and similar repositories for cobolt:
Users that are interested in cobolt are comparing it to the libraries listed below
- Trans-association between HLA and TCR-CDR3☆15Updated last year
- Identify major cellular signals in bulk transcriptomes☆11Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 3 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆21Updated 6 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆22Updated last week
- Regulatory networks with Direct Information in python☆39Updated last year
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆22Updated last month
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆33Updated 5 months ago
- ☆26Updated last year
- Code, data and analysis for moslin.☆12Updated 3 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆42Updated 3 months ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- An R package for visualising cell-cell interactions☆43Updated 5 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆35Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆29Updated 2 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆68Updated 9 months ago
- Code related to scRNA analysis using the scAmpi workflow☆24Updated 2 months ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆14Updated 5 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- Perturb-seq analysis package☆14Updated 8 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆20Updated last month
- Access and Format Single-cell RNA-seq Datasets from Public Resources☆35Updated last month
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆11Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year