Alternatives and similar repositories for cobolt:

Users that are interested in cobolt are comparing it to the libraries listed below

• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆17Updated 2 years ago
• OscarGVelasco / LotOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆21Updated 9 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆26Updated last month
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated this week
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆44Updated 8 months ago
• constantAmateur / cellSignalAnalysis
  Identify major cellular signals in bulk transcriptomes
  ☆11Updated 2 years ago
• DavisLaboratory / scDECAF
  Querying cellular states and programs by learning representations of gene sets
  ☆12Updated 10 months ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆31Updated last month
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆39Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆11Updated last year
• saezlab / decoupleRBench
  Package to benchmark methods from decoupleR
  ☆9Updated 2 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 7 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆51Updated 2 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆35Updated last month
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆28Updated last year
• GfellerLab / MetacellAnalysisToolkit
  Toolkit for metacell analysis
  ☆17Updated 9 months ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆21Updated 8 months ago
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆36Updated 8 months ago
• ajaynadig / TRADEtools
  ☆18Updated 2 months ago
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆25Updated 6 months ago
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆15Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆55Updated 2 years ago
• marcovito / sma
  ☆13Updated last year
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 5 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 6 months ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆23Updated 9 months ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago