Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo
☆21Jan 28, 2025Updated last year
Alternatives and similar repositories for SDEvelo
Users that are interested in SDEvelo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 2, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- ☆11Feb 11, 2021Updated 5 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- ☆33Jul 7, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Apr 4, 2023Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆25Aug 25, 2026Updated 3 weeks ago
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last week
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- ☆11Apr 6, 2022Updated 4 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆14Jun 10, 2025Updated last year
- ☆12May 24, 2024Updated 2 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 11 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆23Oct 19, 2022Updated 3 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- ☆38Jan 22, 2026Updated 7 months ago
- ☆46May 4, 2024Updated 2 years ago
- Analysis and visualization of RNA-Seq results☆34Aug 25, 2026Updated 3 weeks ago
- ☆22Jun 12, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 8, 2026Updated last week
- A Julia package for reconstructing the vector field components; potential, divergence, curl and Jacobian matrix in a data manifold (appro…☆20Jun 23, 2026Updated 2 months ago
- ☆18Dec 4, 2025Updated 9 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆67Apr 14, 2024Updated 2 years ago
- inferring regulatory cellular dynamics☆190Sep 11, 2026Updated last week
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- ☆46Jan 9, 2021Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Sep 9, 2026Updated last week
- A computational framework☆20Jul 23, 2026Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 4 months ago
- ☆27Oct 25, 2023Updated 2 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 4 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year