Alternatives and similar repositories for Awesome-Denovo-Peptide-Sequencing

Users that are interested in Awesome-Denovo-Peptide-Sequencing are comparing it to the libraries listed below

• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆16Updated 9 months ago
• gagneurlab / spectralis
  ☆13Updated 7 months ago
• PHOENIXcenter / pi-PrimeNovo
  ☆30Updated last week
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆11Updated 3 months ago
• jingbo02 / NovoBench
  [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"
  ☆12Updated 5 months ago
• pFindStudio / pGlyco3
  ☆18Updated 3 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆77Updated 9 months ago
• AmadeusloveIris / GraphNovo
  ☆14Updated last year
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last month
• yonghanyu / DeepSearch
  ☆18Updated last month
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆56Updated 3 weeks ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆55Updated 3 months ago
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆80Updated 2 weeks ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆126Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆39Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆39Updated 2 weeks ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆73Updated 3 weeks ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated last week
• westlake-repl / Evolla
  ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.
  ☆48Updated 2 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆24Updated 8 months ago
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆23Updated 7 months ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆138Updated this week
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 6 months ago
• robpearc / DeepFoldRNA
  ☆35Updated last year
• bio-ontology-research-group / deepgo2
  ☆39Updated 8 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆84Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated 2 months ago
• Exscientia / abodybuilder3
  ☆47Updated 6 months ago