Paper collection about de novo peptide Sequening
☆24Feb 5, 2025Updated last year
Alternatives and similar repositories for Awesome-Denovo-Peptide-Sequencing
Users that are interested in Awesome-Denovo-Peptide-Sequencing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆14Nov 23, 2024Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Jun 23, 2026Updated 2 weeks ago
- ☆15Oct 16, 2023Updated 2 years ago
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- ☆23Jun 11, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 3 months ago
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆12Feb 11, 2025Updated last year
- An easy-to-use and interactive web application for FragPipe☆14Mar 8, 2026Updated 4 months ago
- ☆17Oct 1, 2024Updated last year
- ☆45Jan 20, 2026Updated 5 months ago
- modular & open DIA search☆110Updated this week
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated 11 months ago
- An open-source Python package to unify raw MS data accession and storage.☆33Jun 30, 2026Updated last week
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆17Jun 3, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Jun 19, 2026Updated 2 weeks ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆49Updated this week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆191Updated this week
- ☆14Jun 26, 2026Updated last week
- ☆12Jun 13, 2024Updated 2 years ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆32Oct 15, 2024Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆29Aug 16, 2023Updated 2 years ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆26May 23, 2026Updated last month
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Jun 10, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆45Feb 27, 2026Updated 4 months ago
- Code used to analyze datasets and generate figures from Williams et al., 2021☆16Jun 29, 2021Updated 5 years ago
- Collection of peptide de novo sequencing algorithms by BEAM labs☆31May 24, 2026Updated last month
- Search spectral library with entropy similarity☆21Apr 21, 2025Updated last year
- PDV: an integrative proteomics data viewer☆65Jun 30, 2026Updated last week
- Graduate Course at Westlake University☆57Oct 14, 2025Updated 8 months ago
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆19Sep 7, 2023Updated 2 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Repository for mzIdentML and the corresponding examples☆27May 6, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- ☆11Apr 25, 2026Updated 2 months ago
- ☆38Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆54Updated this week
- RetroBridge: Markov Bridge Model for Retrosynthesis Planning☆36Mar 26, 2024Updated 2 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆32Oct 5, 2022Updated 3 years ago
- UniGraph2: Learning a Unified Embedding Space to Bind Multimodal Graphs (WWW'25)☆18Apr 22, 2025Updated last year