loicchadoutaud / sCellSTLinks
☆13Updated last month
Alternatives and similar repositories for sCellST
Users that are interested in sCellST are comparing it to the libraries listed below
Sorting:
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆27Updated last month
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆60Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 5 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆39Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆141Updated 8 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆53Updated last week
- comseg☆23Updated 7 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- ☆32Updated 8 months ago
- ☆50Updated 3 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- Bayesian Analytics for Spatial Segmentation☆29Updated 4 months ago
- ☆11Updated 7 months ago
- ☆35Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆98Updated 2 months ago
- Integrated pipeline for multiplexed image analysis☆96Updated 5 months ago
- ☆22Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 5 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆58Updated last year
- ☆53Updated 7 months ago
- ☆11Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆38Updated 6 months ago