Alternatives and similar repositories for CellFM

Users that are interested in CellFM are comparing it to the libraries listed below

• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆59Updated last year
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆42Updated last week
• madilabcode / scNET
  ☆55Updated last month
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆63Updated 2 weeks ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆152Updated 8 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆119Updated this week
• Durenlab / LINGER
  ☆118Updated 5 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆144Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆98Updated last month
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆107Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆43Updated 3 months ago
• siyuh / Squidiff
  ☆63Updated last week
• lanagarmire / Asgard
  ☆44Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆93Updated 3 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆59Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆95Updated 2 weeks ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated 3 weeks ago
• TencentAILabHealthcare / scTranslator
  ☆52Updated 2 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆73Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆122Updated 7 months ago
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• snap-stanford / SATURN
  ☆143Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 6 months ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• theislab / scTab
  ☆61Updated last year
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆106Updated 4 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆95Updated 10 months ago