Alternatives and similar repositories for CellFM

Users that are interested in CellFM are comparing it to the libraries listed below

• madilabcode / scNET
  ☆60Updated this week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆114Updated 4 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆69Updated 3 months ago
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆50Updated 3 weeks ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated 2 weeks ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆26Updated 8 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆50Updated 6 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆77Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆101Updated this week
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆165Updated 11 months ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year
• siyuh / Squidiff
  ☆116Updated 2 weeks ago
• yjgeno / GenKI
  ☆27Updated last year
• TencentAILabHealthcare / scTranslator
  ☆87Updated 5 months ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆63Updated 3 weeks ago
• dpeerlab / ENVI
  ☆52Updated 4 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆109Updated this week
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆35Updated 2 months ago
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆72Updated 2 months ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆150Updated 2 months ago
• Durenlab / LINGER
  ☆125Updated last week
• QuKunLab / SPACEL
  ☆60Updated last year
• mlbio-epfl / systema
  ☆52Updated 3 weeks ago
• Patchouli-M / SequencingCancerFinder
  ☆44Updated 8 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆53Updated 9 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆138Updated last month