single-cell-genetics / cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
☆127Updated 3 months ago
Related projects: ⓘ
- A tool for detecting somatic variants in single cell data☆152Updated this week
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆71Updated 3 months ago
- chromatin Variability Across Regions (of the genome!)☆153Updated 2 months ago
- Tools for single-cell data processing☆117Updated 3 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆74Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆153Updated 7 months ago
- Clustering scRNAseq by genotypes☆160Updated 3 weeks ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆115Updated 2 years ago
- R package to access DoRothEA's regulons☆132Updated 6 months ago
- Conversion between scRNA-seq objects☆146Updated 2 months ago
- Easy single cell analysis platform for enrichment☆141Updated this week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆99Updated last year
- SNV calling from single cell sequencing☆75Updated 2 weeks ago
- SingleCellNet: classify single cells across species and platforms☆128Updated last year
- ☆97Updated 4 months ago
- mgatk: mitochondrial genome analysis toolkit☆100Updated 6 months ago
- A Bayesian model for compositional single-cell data analysis☆147Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆163Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆112Updated 2 weeks ago
- ☆56Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆129Updated 2 months ago
- ☆144Updated 3 weeks ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆86Updated last year
- Methods for detecting doublets in single-cell sequencing data☆154Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆145Updated 2 months ago
- Gene set scoring for single-cell data☆133Updated 4 months ago
- software to detect doublets☆82Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆77Updated last month
- trajectory inference☆86Updated last week
- R implementation of MULTI-seq sample classification workflow☆59Updated 9 months ago