Efficient genotyping bi-allelic SNPs on single cells
☆162Oct 30, 2025Updated 6 months ago
Alternatives and similar repositories for cellsnp-lite
Users that are interested in cellsnp-lite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆102Apr 11, 2025Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆219Feb 4, 2026Updated 3 months ago
- Single-Cell Genotyping Tool☆217Oct 2, 2023Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆220Sep 15, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- Tool for modelling of mitochondrial heteroplasmy☆21Jul 16, 2024Updated last year
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- ☆90Apr 5, 2021Updated 5 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- Clustering scRNAseq by genotypes☆206Apr 30, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- Tools for working with BUS files☆102May 27, 2025Updated 11 months ago
- A toolkit for single-cell immune profiling☆368May 12, 2026Updated 2 weeks ago
- Genetic multiplexing of barcoded single cell RNA-seq☆137Jul 1, 2024Updated last year
- ☆284Oct 13, 2025Updated 7 months ago
- A tool for semi-automatic cell type classification☆483Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆433May 11, 2026Updated 2 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆251Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inferring CNV from Single-Cell RNA-Seq☆668Nov 14, 2025Updated 6 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 5 months ago
- ☆15Apr 2, 2023Updated 3 years ago
- ☆18Feb 25, 2022Updated 4 years ago
- Interactively analyze single cell genomic data☆187Jan 14, 2026Updated 4 months ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- ☆85Dec 11, 2023Updated 2 years ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Oct 20, 2025Updated 7 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆207Oct 20, 2025Updated 7 months ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆34Updated this week
- Spatial omics analysis toolbox☆374Updated this week
- scPred package for cell type prediction from scRNA-seq data☆102Jan 18, 2024Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆186Aug 12, 2025Updated 9 months ago