single-cell-genetics / cellsnp-liteLinks
Efficient genotyping bi-allelic SNPs on single cells
☆144Updated last year
Alternatives and similar repositories for cellsnp-lite
Users that are interested in cellsnp-lite are comparing it to the libraries listed below
Sorting:
- chromatin Variability Across Regions (of the genome!)☆178Updated 11 months ago
- SNV calling from single cell sequencing☆100Updated 7 months ago
- ☆107Updated last year
- Tools for single-cell data processing☆125Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 2 months ago
- Analysis pipeline for ATAC-seq data☆61Updated last year
- AUCell: score single cells with gene regulatory networks☆154Updated last year
- A tool for detecting somatic variants in single cell data☆206Updated 9 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Clustering scRNAseq by genotypes☆184Updated 7 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆184Updated this week
- R package to access DoRothEA's regulons☆149Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆80Updated last year
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 5 months ago
- ☆68Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆141Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆117Updated last year