10XGenomics / vartrixLinks
Single-Cell Genotyping Tool
☆212Updated 2 years ago
Alternatives and similar repositories for vartrix
Users that are interested in vartrix are comparing it to the libraries listed below
Sorting:
- Efficient genotyping bi-allelic SNPs on single cells☆154Updated 2 weeks ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆117Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆230Updated 2 months ago
- ☆143Updated 6 years ago
- Clustering scRNAseq by genotypes☆190Updated this week
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆104Updated 3 weeks ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ☆99Updated last month
- Analysis pipeline for ATAC-seq data☆78Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- Detecting sites of genomic enrichment☆196Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- Basic workflow for ATAC-seq analysis☆90Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆198Updated 3 weeks ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- ASCAT R package☆191Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ☆112Updated last year
- CUT&RUN and CUT&Tag data processing and analysis☆114Updated 8 months ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 9 months ago
- Tools for single-cell data processing☆127Updated last year
- ☆120Updated 2 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆239Updated 4 months ago
- FAN-C: Framework for the ANalysis of C-like data☆120Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- Java tools for analyzing Drop-seq data☆130Updated last week