Alternatives and similar repositories for vartrix

Users that are interested in vartrix are comparing it to the libraries listed below

• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆178Updated last year
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆109Updated 2 years ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆145Updated last year
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆216Updated 3 weeks ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆186Updated 8 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆208Updated 10 months ago
• harvardinformatics / ATAC-seq
  ☆138Updated 6 years ago
• broadinstitute / Drop-seq
  Java tools for analyzing Drop-seq data
  ☆128Updated last week
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆110Updated 4 months ago
• kharchenkolab / numbat
  Haplotype-aware CNV analysis from single-cell RNA-seq
  ☆186Updated 3 weeks ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆94Updated 2 months ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆184Updated 3 months ago
• JiekaiLab / scTE
  ☆108Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆286Updated 2 years ago
• TrinityCTAT / Trinity_CTAT
  ☆117Updated last year
• AlexandrovLab / SigProfilerExtractor
  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…
  ☆162Updated last week
• caleblareau / mgatk
  mgatk: mitochondrial genome analysis toolkit
  ☆108Updated 5 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆125Updated last year
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆102Updated 2 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆63Updated last year
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆104Updated 8 months ago
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆106Updated last week
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆193Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated this week
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆233Updated 2 weeks ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆95Updated 4 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆221Updated last year
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆206Updated last week