Alternatives and similar repositories for vartrix:

Users that are interested in vartrix are comparing it to the libraries listed below

• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆106Updated 2 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆101Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆162Updated 6 months ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆190Updated last year
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆238Updated 3 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆183Updated 4 months ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆173Updated last month
• harvardinformatics / ATAC-seq
  ☆125Updated 6 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆146Updated 2 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆206Updated last week
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆174Updated 2 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆210Updated 7 months ago
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆122Updated 4 years ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆136Updated 7 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆263Updated 2 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆191Updated 8 months ago
• hbctraining / Intro-to-ChIPseq-flipped
  ☆85Updated 7 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 4 years ago
• CostaLab / reg-gen
  Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
  ☆108Updated 2 months ago
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆195Updated 2 months ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆87Updated this week
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆117Updated 2 years ago
• broadinstitute / Drop-seq
  Java tools for analyzing Drop-seq data
  ☆124Updated last week
• JiekaiLab / scTE
  ☆104Updated 9 months ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆93Updated 3 years ago
• kharchenkolab / numbat
  Haplotype-aware CNV analysis from single-cell RNA-seq
  ☆175Updated last month
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 8 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆283Updated 3 years ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆195Updated this week
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year