compbiomed / singleCellTKLinks
Interactively analyze single cell genomic data
☆184Updated last month
Alternatives and similar repositories for singleCellTK
Users that are interested in singleCellTK are comparing it to the libraries listed below
Sorting:
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆212Updated 3 months ago
- Clone of the Bioconductor repository for the SingleR package.☆198Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆211Updated 3 weeks ago
- Easy single cell analysis platform for enrichment☆198Updated 3 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆138Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆239Updated 3 months ago
- Cell types enrichment analysis☆204Updated last year
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Dataset distribution for Seurat☆148Updated 8 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆205Updated last month
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆125Updated 2 weeks ago
- Fast Wilcoxon and auROC☆196Updated last year
- Shiny Interactive Web Apps for Single-Cell Data☆199Updated 7 months ago
- ☆178Updated 6 months ago
- Gene set variation analysis☆230Updated this week
- Clustering scRNAseq by genotypes☆190Updated last week
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- my notes for scATACseq analysis☆131Updated last year
- ☆187Updated 2 weeks ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- Interfaces for HDF5-based Single Cell File Formats☆168Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- Gene set scoring for single-cell data☆170Updated 3 weeks ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆209Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- RNA velocity estimation in R☆190Updated 2 years ago
- Convert Seurat objects to 10x Genomics Loupe files.☆145Updated 4 months ago
- Java tools for analyzing Drop-seq data☆130Updated 2 weeks ago