Alternatives and similar repositories for singleCellTK:

Users that are interested in singleCellTK are comparing it to the libraries listed below

• ncborcherding / escape
  Easy single cell analysis platform for enrichment
  ☆157Updated last month
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆182Updated last week
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆171Updated this week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆176Updated 3 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆263Updated 2 years ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆216Updated 3 weeks ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆236Updated 2 weeks ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆162Updated 6 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆157Updated 11 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆175Updated last week
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆173Updated 2 months ago
• neurorestore / Libra
  ☆159Updated 4 months ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆220Updated 10 months ago
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆193Updated 3 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆191Updated 7 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆119Updated 2 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆208Updated this week
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆229Updated last year
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆98Updated 10 months ago
• navinlabcode / copykat
  ☆219Updated 6 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆187Updated 5 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆218Updated 2 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆221Updated last year
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆261Updated last month
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆157Updated last year
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆116Updated 4 months ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆133Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆157Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 2 months ago