☆314Jun 16, 2026Updated 4 months ago
Alternatives and similar repositories for copykat
Users that are interested in copykat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆102Dec 8, 2022Updated 3 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆232Feb 4, 2026Updated 8 months ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆200Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆491Jan 22, 2026Updated 9 months ago
- NicheNet: predict active ligand-target links between interacting cells☆683Updated this week
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated 2 years ago
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Oct 15, 2026Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆92Apr 5, 2021Updated 5 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 7 months ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆297Jul 23, 2026Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆482Apr 11, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆253May 11, 2026Updated 5 months ago
- Spatial omics analysis toolbox☆394Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆270Jul 8, 2026Updated 3 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- ☆136Aug 23, 2026Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package to infer biological activities from omics data using a collection of methods.☆313Dec 16, 2025Updated 10 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆186Jun 10, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 3 years ago