☆303Jun 16, 2026Updated 2 months ago
Alternatives and similar repositories for copykat
Users that are interested in copykat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring CNV from Single-Cell RNA-Seq☆680Nov 14, 2025Updated 9 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆445Updated this week
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆227Feb 4, 2026Updated 6 months ago
- Scissor package☆274May 10, 2024Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆228Sep 15, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆196Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆481Jan 22, 2026Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆673Jun 1, 2026Updated 2 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆212Oct 20, 2025Updated 10 months ago
- Methods for detecting doublets in single-cell sequencing data☆263Jul 7, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆560Mar 21, 2025Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆465Apr 11, 2026Updated 4 months ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆173May 6, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆345Apr 23, 2024Updated 2 years ago
- ☆92Apr 5, 2021Updated 5 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆137Sep 6, 2024Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆128Mar 19, 2026Updated 5 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Methods to discover gene programs on single-cell data☆207Jul 21, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Jul 23, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated last year
- ☆134Aug 23, 2026Updated last week
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Aug 6, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 8 months ago
- ☆160Mar 20, 2026Updated 5 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆341Nov 1, 2022Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆244May 23, 2020Updated 6 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆310Jun 17, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆196Updated this week