JEFworks-Lab / MERINGUELinks
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
☆81Updated 3 years ago
Alternatives and similar repositories for MERINGUE
Users that are interested in MERINGUE are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- An R package for handling and analysing imaging mass cytometry data☆27Updated this week
- ☆94Updated last month
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- ☆45Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- Multiview Intercellular SpaTial modeling framework☆70Updated 4 months ago
- ☆41Updated 2 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆81Updated this week
- Pan-Cancer Single Cell Classifier☆82Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- From geospatial to spatial -omics☆98Updated last month
- Unified access to several second-generation deconvolution methods☆79Updated 2 weeks ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆98Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated 5 months ago
- Latent Embedding Multivariate Regression☆95Updated 11 months ago
- ☆36Updated this week
- BANKSY: spatial clustering☆124Updated last week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 6 months ago
- Multiome GRN inference.☆128Updated last year