characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
☆90Jun 7, 2022Updated 3 years ago
Alternatives and similar repositories for MERINGUE
Users that are interested in MERINGUE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Aug 3, 2025Updated 8 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- Test genes for Spatial Variation☆183May 7, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 5 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Spatially resolved transcriptomic analysis☆65Nov 17, 2022Updated 3 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆175Jan 8, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Apr 8, 2026Updated last week
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 10 months ago
- Spatial alignment of single cell transcriptomic data.☆361Jul 1, 2025Updated 9 months ago
- ☆28Nov 21, 2019Updated 6 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- From geospatial to spatial -omics☆102Mar 18, 2026Updated 3 weeks ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- Landscape Single Cell Entropy☆22Aug 24, 2020Updated 5 years ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BANKSY: spatial clustering☆140Oct 15, 2025Updated 5 months ago
- Spatial omics analysis toolbox☆369Apr 7, 2026Updated last week
- An R package for performing cell typing in SMI and other single cell data☆49May 19, 2025Updated 10 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆139Feb 20, 2025Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆49Jul 16, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 11 months ago
- Extension of SpatialExperiment with sf☆57Apr 7, 2026Updated last week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆294Jun 17, 2025Updated 9 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆91Dec 8, 2022Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆59Oct 3, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago