JEFworks-Lab / MERINGUELinks
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
☆81Updated 3 years ago
Alternatives and similar repositories for MERINGUE
Users that are interested in MERINGUE are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- Multiview Intercellular SpaTial modeling framework☆71Updated 7 months ago
- ☆48Updated 2 months ago
- ☆97Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆87Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆83Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated last month
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆93Updated 7 months ago
- An R package for handling and analysing imaging mass cytometry data☆29Updated this week
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 months ago
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- Unified access to several second-generation deconvolution methods☆88Updated this week
- List of Spatial Transcriptomics related Tools organized per category☆101Updated this week
- Spatial Cellular Estimator for Tumors☆60Updated last week
- ☆41Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- ☆41Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆80Updated 8 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆89Updated 2 weeks ago