Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq
☆13Apr 2, 2024Updated 2 years ago
Alternatives and similar repositories for hahmmr
Users that are interested in hahmmr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to plot maps of clone distributions in somatic evolution☆20Jan 8, 2024Updated 2 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆224Feb 4, 2026Updated 5 months ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 6 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Jul 13, 2024Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 11 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 6 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- General Purpose Optimization in R using C++: provides a unified C++ wrapper to call functions of the algorithms underlying the optim() s…☆22Oct 2, 2025Updated 9 months ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient genotyping bi-allelic SNPs on single cells☆164Oct 30, 2025Updated 8 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 5 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Apr 13, 2026Updated 3 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆17Jun 28, 2022Updated 4 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for the clone2vec python package☆24May 6, 2026Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆26Feb 26, 2026Updated 5 months ago
- Materials accompanying the upstrap paper☆12Oct 19, 2020Updated 5 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- Zotero Highlight Collector☆33Jul 13, 2026Updated 2 weeks ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated 2 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 5 months ago
- ☆29Jul 20, 2026Updated last week
- ☆16May 8, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Computational identification of targets for CAR-T cell therapy in AML☆22Dec 25, 2022Updated 3 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Feb 16, 2018Updated 8 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Jul 8, 2026Updated 3 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆38Nov 18, 2024Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆66Apr 14, 2024Updated 2 years ago
- Integral analysis of diversity based on Hill numbers☆12Jun 18, 2026Updated last month
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago