kharchenkolab / hahmmr
Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq
☆13Updated last year
Alternatives and similar repositories for hahmmr:
Users that are interested in hahmmr are comparing it to the libraries listed below
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 9 months ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- ☆12Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆23Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- GLASS consortium☆13Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- scover☆23Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆18Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Pan-transcriptomic phenotyping☆16Updated 3 weeks ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 9 months ago
- ☆22Updated 3 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- ☆20Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆29Updated last year
- SCASA: Single cell transcript quantification tool☆20Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago