single-cell-genetics / cardelinoLinks
Clone identification from single-cell data
☆62Updated 2 years ago
Alternatives and similar repositories for cardelino
Users that are interested in cardelino are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- ☆29Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- ☆31Updated 4 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆41Updated 3 weeks ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- ☆28Updated 6 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- scWGCNA☆60Updated 2 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆16Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year