single-cell-genetics / cardelino
Clone identification from single-cell data
☆61Updated 2 years ago
Alternatives and similar repositories for cardelino:
Users that are interested in cardelino are comparing it to the libraries listed below
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- ☆41Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆28Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- ☆32Updated 5 years ago
- ☆16Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆29Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆41Updated last month
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Single-cell Case Control Analysis☆48Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆30Updated 3 months ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆35Updated 2 months ago
- ☆49Updated 9 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- scWGCNA☆59Updated 2 years ago
- An analytics package for single cell data☆22Updated 2 years ago