single-cell-genetics / cardelino

Related projects ⓘ

Alternatives and complementary repositories for cardelino

• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆23Updated 5 months ago
• shenorrLabTRDF / cellAlign
  ☆37Updated 3 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆43Updated 4 years ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆33Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• satijalab / Integration2019
  ☆16Updated 5 years ago
• PoolLab / generecovery
  ☆29Updated last year
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆40Updated 2 months ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆54Updated 2 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆42Updated 3 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆43Updated 3 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆34Updated 7 months ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆41Updated 5 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 3 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated 9 months ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆44Updated 7 months ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• lhe17 / nebula
  ☆28Updated 8 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆30Updated last year
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 3 years ago
• lcmmichielsen / scHPL
  ☆34Updated 6 months ago