Clone identification from single-cell data
☆63Nov 10, 2022Updated 3 years ago
Alternatives and similar repositories for cardelino
Users that are interested in cardelino are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Apr 9, 2026Updated last week
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 5 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Efficient genotyping bi-allelic SNPs on single cells☆158Oct 30, 2025Updated 5 months ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆37Dec 15, 2020Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆27Jun 24, 2025Updated 9 months ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Aug 22, 2021Updated 4 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆177Jun 10, 2024Updated last year
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆102Jul 19, 2021Updated 4 years ago
- ☆75Feb 4, 2024Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆92Dec 8, 2022Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Mar 31, 2026Updated 2 weeks ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆211Feb 4, 2026Updated 2 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆224Apr 1, 2026Updated 2 weeks ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Jan 6, 2026Updated 3 months ago
- Clustering scRNAseq by genotypes☆202Apr 2, 2026Updated 2 weeks ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 3 years ago
- Single-Cell Genotyping Tool☆217Oct 2, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆34Jun 7, 2019Updated 6 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple simulation of single-cell RNA sequencing data☆233Updated this week
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- ☆87Apr 5, 2021Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆171Jan 26, 2024Updated 2 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆12May 29, 2024Updated last year