alexisvdb / singleCellHaystackLinks
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
☆85Updated last year
Alternatives and similar repositories for singleCellHaystack
Users that are interested in singleCellHaystack are comparing it to the libraries listed below
Sorting:
- ☆55Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- ☆43Updated 4 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- scWGCNA☆61Updated 2 years ago
- ☆58Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- ☆37Updated 9 years ago
- ☆43Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago