☆92Apr 5, 2021Updated 5 years ago
Alternatives and similar repositories for CaSpER
Users that are interested in CaSpER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆104Jul 19, 2021Updated 5 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆232Feb 4, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆314Jun 16, 2026Updated 4 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 7 months ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆38Dec 15, 2020Updated 5 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 5 years ago
- ☆18Sep 13, 2023Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆172Sep 29, 2026Updated last month
- Clone identification from single-cell data☆67Nov 10, 2022Updated 3 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆23May 21, 2024Updated 2 years ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆253May 11, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Nov 2, 2017Updated 8 years ago
- ☆136Aug 23, 2026Updated 2 months ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆557Aug 3, 2026Updated 2 months ago
- Tools for assessing clustering robustness☆34Sep 27, 2026Updated last month
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 3 years ago
- Detection of super-enhancers in cancer data☆22Apr 10, 2023Updated 3 years ago
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- ☆17Sep 28, 2022Updated 4 years ago
- R package for large-scale CNV analysis from RNA-seq☆21Dec 21, 2023Updated 2 years ago
- A package for automated processing of single cell RNA-seq data in cancer☆117Aug 27, 2025Updated last year
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago