akdess / CaSpERLinks
☆87Updated 4 years ago
Alternatives and similar repositories for CaSpER
Users that are interested in CaSpER are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆59Updated last month
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- ☆74Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- SNV calling from single cell sequencing☆118Updated last year
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆36Updated 4 years ago
- ☆59Updated last year
- ☆48Updated 11 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆89Updated 3 months ago
- Genetic multiplexing of barcoded single cell RNA-seq☆131Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆55Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago