akdess / CaSpERLinks
☆88Updated 4 years ago
Alternatives and similar repositories for CaSpER
Users that are interested in CaSpER are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- ☆71Updated 2 years ago
- SNV calling from single cell sequencing☆106Updated 10 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆86Updated 2 weeks ago
- Clone of the Bioconductor repository for the DropletUtils package.☆61Updated 2 weeks ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆96Updated 11 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- ☆59Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆111Updated 2 weeks ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- ☆47Updated 8 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆68Updated 3 months ago
- ☆79Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago