BorchLab / escape
Easy single cell analysis platform for enrichment
☆177Updated this week
Alternatives and similar repositories for escape
Users that are interested in escape are comparing it to the libraries listed below
Sorting:
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆194Updated 3 weeks ago
- Gene set scoring for single-cell data☆149Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆253Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆191Updated last week
- Clone of the Bioconductor repository for the SingleR package.☆189Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆202Updated 9 months ago
- AUCell: score single cells with gene regulatory networks☆152Updated last year
- Methods for detecting doublets in single-cell sequencing data☆192Updated last month
- Interactively analyze single cell genomic data☆182Updated last week
- Fast Wilcoxon and auROC☆180Updated 6 months ago
- ☆167Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆145Updated 4 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆206Updated this week
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 8 months ago
- Multiome GRN inference.☆121Updated last year
- reticulate-free single cell format conversion☆150Updated 5 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆173Updated 10 months ago
- Gene set variation analysis☆216Updated 3 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆127Updated 6 months ago
- Tools for single-cell data processing☆124Updated 11 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆276Updated 2 years ago
- ☆134Updated last month
- Conversion between scRNA-seq objects☆174Updated 3 weeks ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆104Updated last month
- Cell type prioritization in single-cell data☆118Updated 6 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago