Easy single cell analysis platform for enrichment
☆214Jan 4, 2026Updated last month
Alternatives and similar repositories for escape
Users that are interested in escape are comparing it to the libraries listed below
Sorting:
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆289Feb 18, 2026Updated last week
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 2 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- A toolkit for single-cell immune profiling☆363Feb 19, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆420Sep 4, 2025Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆232Aug 7, 2024Updated last year
- Gene set scoring for single-cell data☆183Feb 11, 2026Updated 2 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 3 weeks ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated 9 months ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆94Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- Clone of the Bioconductor repository for the SingleR package.☆199Updated this week
- R package to infer biological activities from omics data using a collection of methods.☆285Dec 16, 2025Updated 2 months ago
- Methods to discover gene programs on single-cell data☆174Sep 26, 2025Updated 5 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- R client for the OmniPath web service☆154Feb 12, 2026Updated 2 weeks ago
- Spatial omics analysis toolbox☆362Feb 12, 2026Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆626Nov 28, 2025Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 2 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 9 months ago
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆764Jan 6, 2024Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 3 months ago
- R package to do the Ligand Receptor Analysis Visualization☆49Feb 13, 2026Updated 2 weeks ago