Easy single cell analysis platform for enrichment
☆225Apr 3, 2026Updated 2 months ago
Alternatives and similar repositories for escape
Users that are interested in escape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interpretation of cell states using reference single-cell maps☆321Dec 19, 2025Updated 5 months ago
- Methods for detecting doublets in single-cell sequencing data☆252Jun 1, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆301May 11, 2026Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysis☆476Mar 13, 2026Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆232Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TRAjectory-based Differential Expression analysis for SEQuencing data☆296Jun 17, 2025Updated 11 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆329Nov 1, 2022Updated 3 years ago
- Gene set scoring for single-cell data☆196Apr 29, 2026Updated last month
- A toolkit for single-cell immune profiling☆368May 12, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- R package to infer biological activities from omics data using a collection of methods.☆296Dec 16, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆202May 21, 2026Updated 2 weeks ago
- AUCell: score single cells with gene regulatory networks☆193Mar 9, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆188Aug 12, 2025Updated 9 months ago
- A package to help convert different single-cell data formats to each other☆468Feb 20, 2026Updated 3 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆253Apr 1, 2026Updated 2 months ago
- Gene set variation analysis☆244May 25, 2026Updated 2 weeks ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 5 months ago
- R client for the OmniPath web service☆166Apr 29, 2026Updated last month
- Methods to discover gene programs on single-cell data☆189May 21, 2026Updated 2 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆264Jan 10, 2026Updated 4 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆168May 6, 2025Updated last year
- Spatial omics analysis toolbox☆375May 26, 2026Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆787Jan 6, 2024Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 7 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆647Mar 11, 2026Updated 2 months ago
- Find causal cell-types underlying complex trait genetics☆96Feb 8, 2026Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆655Jun 1, 2026Updated last week
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 5 months ago
- Cell type prioritization in single-cell data☆143Mar 26, 2026Updated 2 months ago