BorchLab / escape
Easy single cell analysis platform for enrichment
☆161Updated last month
Alternatives and similar repositories for escape:
Users that are interested in escape are comparing it to the libraries listed below
- Gene set scoring for single-cell data☆143Updated 4 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆177Updated 2 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆99Updated last year
- Methods for detecting doublets in single-cell sequencing data☆184Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆181Updated 2 weeks ago
- ☆163Updated 6 months ago
- Interactively analyze single cell genomic data☆181Updated last week
- AUCell: score single cells with gene regulatory networks☆144Updated 11 months ago
- Clone of the Bioconductor repository for the SingleR package.☆184Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated this week
- Gene set variation analysis☆210Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆112Updated 5 months ago
- Fast Wilcoxon and auROC☆175Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆193Updated 6 months ago
- Conversion between scRNA-seq objects☆159Updated last week
- Methods to discover gene programs on single-cell data☆102Updated 3 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 2 months ago
- Multiome GRN inference.☆119Updated 10 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆122Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆156Updated last year
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆105Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 2 months ago
- Some tools for plotting single-cell data☆167Updated last month
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆265Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- Interfaces for HDF5-based Single Cell File Formats☆156Updated last year