Alternatives and similar repositories for AUCell:

Users that are interested in AUCell are comparing it to the libraries listed below

• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆109Updated 3 weeks ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆94Updated 3 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆101Updated last year
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆102Updated last week
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆170Updated this week
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated 2 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• quadbio / Pando
  Multiome GRN inference.
  ☆120Updated 11 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆148Updated 5 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆160Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆142Updated 2 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆123Updated 10 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆122Updated 8 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆81Updated 3 weeks ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆115Updated 7 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆93Updated last year
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆93Updated 3 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆186Updated 3 weeks ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 8 months ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆137Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆72Updated 7 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆114Updated 5 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆186Updated 2 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆121Updated 3 weeks ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆111Updated 3 months ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆126Updated 5 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆143Updated last year
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆81Updated 2 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 3 months ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆143Updated 9 months ago