kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
☆181Updated last month
Alternatives and similar repositories for numbat:
Users that are interested in numbat are comparing it to the libraries listed below
- A tool for detecting somatic variants in single cell data☆199Updated 7 months ago
- chromatin Variability Across Regions (of the genome!)☆173Updated 9 months ago
- Tools for single-cell data processing☆124Updated 11 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆273Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆144Updated 3 months ago
- Gene set scoring for single-cell data☆149Updated 2 weeks ago
- ☆105Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆143Updated 10 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- Clustering scRNAseq by genotypes☆179Updated 5 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- reticulate-free single cell format conversion☆145Updated 5 months ago
- ☆166Updated 8 months ago
- Cell types enrichment analysis☆195Updated 11 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- ☆134Updated 3 weeks ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆187Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- Conversion between scRNA-seq objects☆173Updated 2 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆192Updated 2 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- ☆231Updated 10 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆156Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆191Updated last month
- SNV calling from single cell sequencing☆97Updated 5 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- AUCell: score single cells with gene regulatory networks☆152Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated last year
- Single Cell Cluster Evaluation☆94Updated 3 years ago