Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
☆233Feb 4, 2026Updated 9 months ago
Alternatives and similar repositories for numbat
Users that are interested in numbat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated 2 years ago
- ☆315Jun 16, 2026Updated 4 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆174Sep 29, 2026Updated last month
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Sep 25, 2026Updated last month
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- ☆92Apr 5, 2021Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- R package to infer biological activities from omics data using a collection of methods.☆314Oct 26, 2026Updated last week
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆129Mar 19, 2026Updated 7 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆244Mar 2, 2026Updated 8 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆127Jan 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-Cell Genotyping Tool☆216Updated this week
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆103Dec 8, 2022Updated 3 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Updated this week
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated 3 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆557Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆484Apr 11, 2026Updated 6 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆201Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆52Aug 18, 2025Updated last year
- TCR and BCR assembly from RNA-seq data☆364Sep 25, 2026Updated last month
- ☆13Apr 16, 2021Updated 5 years ago
- Clustering scRNAseq by genotypes☆216Apr 30, 2026Updated 6 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆428Sep 12, 2026Updated last month
- Clone identification from single-cell data☆68Nov 10, 2022Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆459Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆346Nov 1, 2022Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆685Updated this week
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆206Aug 24, 2026Updated 2 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆255Apr 3, 2026Updated 7 months ago