satijalab / sctransformLinks
R package for modeling single cell UMI expression data using regularized negative binomial regression
☆242Updated 7 months ago
Alternatives and similar repositories for sctransform
Users that are interested in sctransform are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆299Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆198Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆279Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆315Updated last year
- Tools and methods for analysis of single cell assay data in R☆258Updated last month
- A toolkit for single-cell immune profiling☆355Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆311Updated 5 years ago
- ☆257Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆403Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆420Updated last month
- Dataset distribution for Seurat☆148Updated 9 months ago
- Multi-subject Single Cell Deconvolution☆276Updated last year
- Methods for detecting doublets in single-cell sequencing data☆218Updated last month
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆239Updated 3 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆212Updated last month
- Community-provided extensions to Seurat☆352Updated last year
- ☆178Updated 7 months ago
- Interpretation of cell states using reference single-cell maps☆300Updated 3 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆284Updated 5 months ago
- Easy single cell analysis platform for enrichment☆199Updated last week
- Gene set variation analysis☆230Updated this week
- High dimensional weighted gene co-expression network analysis☆449Updated last month
- Interfaces for HDF5-based Single Cell File Formats☆168Updated 2 years ago
- RNA velocity estimation in R☆191Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆193Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆295Updated 2 years ago
- Interactively analyze single cell genomic data☆184Updated 2 months ago