A toolkit for single-cell immune profiling
β363Feb 28, 2026Updated this week
Alternatives and similar repositories for scRepertoire
Users that are interested in scRepertoire are comparing it to the libraries listed below
Sorting:
- 𧬠immunarch [R package] β Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Designβ338Nov 18, 2025Updated 3 months ago
- Interpretation of cell states using reference single-cell mapsβ312Dec 19, 2025Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis toolsβ218Feb 16, 2026Updated 2 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell dataβ765Jan 6, 2024Updated 2 years ago
- TCR and BCR assembly from RNA-seq dataβ339Jan 22, 2026Updated last month
- A scanpy extension to analyse single-cell TCR and BCR data.β245Feb 23, 2026Updated last week
- π Tools and databases for analyzing HLA and VDJ genes.β237Feb 12, 2026Updated 2 weeks ago
- T/B cell receptor sequencing analysis notesβ276Dec 1, 2024Updated last year
- Interactively analyze single cell genomic dataβ185Jan 14, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphsβ421Sep 4, 2025Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cellsβ620Nov 12, 2025Updated 3 months ago
- Using TCR and expression for sequence embeddingβ62Jan 6, 2026Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.β289Updated this week
- Easy single cell analysis platform for enrichmentβ215Jan 4, 2026Updated last month
- High dimensional weighted gene co-expression network analysisβ465Feb 13, 2026Updated 2 weeks ago
- Methods for detecting doublets in single-cell sequencing dataβ231Feb 12, 2026Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq dataβ313Nov 1, 2022Updated 3 years ago
- Gene set variation analysisβ231Updated this week
- Inferring CNV from Single-Cell RNA-Seqβ653Nov 14, 2025Updated 3 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Dataβ238May 8, 2023Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing dataβ525Mar 21, 2025Updated 11 months ago
- Clonotype Neighbor Graph Analysisβ95Feb 12, 2026Updated 2 weeks ago
- Clone of the Bioconductor repository for the SingleR package.β199Feb 23, 2026Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmonyβ622Oct 10, 2025Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ290Jun 17, 2025Updated 8 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regressionβ251Jan 10, 2026Updated last month
- Community-provided extensions to Seuratβ358Feb 17, 2026Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)β117Apr 26, 2025Updated 10 months ago
- R package for integrating and analyzing multiple single-cell datasetsβ424Feb 4, 2026Updated 3 weeks ago
- A package to help convert different single-cell data formats to each otherβ458Feb 20, 2026Updated last week
- R package to infer biological activities from omics data using a collection of methods.β285Dec 16, 2025Updated 2 months ago
- Scissor packageβ252May 10, 2024Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCRβ106Dec 18, 2025Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis packageβ124Updated this week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β521Jan 5, 2026Updated last month
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing dataβ214Dec 10, 2025Updated 2 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. β¦β128Nov 10, 2025Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmeworkβ232Aug 7, 2024Updated last year
- Reference mapping for single-cell genomicsβ399Dec 2, 2025Updated 3 months ago