BorchLab / scRepertoireLinks
A toolkit for single-cell immune profiling
☆349Updated this week
Alternatives and similar repositories for scRepertoire
Users that are interested in scRepertoire are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆295Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆421Updated last month
- Community-provided extensions to Seurat☆348Updated 10 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆431Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆297Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆395Updated last month
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆303Updated 5 years ago
- ☆274Updated 10 months ago
- NicheNet: predict active ligand-target links between interacting cells☆574Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆293Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆236Updated 5 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆308Updated last year
- ☆409Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆497Updated 6 months ago
- ☆359Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆272Updated last week
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆327Updated 3 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆394Updated last month
- A package to help convert different single-cell data formats to each other☆442Updated last year
- T/B cell receptor sequencing analysis notes☆265Updated 10 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆292Updated 2 years ago
- ☆253Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆504Updated last week
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆221Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆319Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆434Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago