A toolkit for single-cell immune profiling
☆366Mar 9, 2026Updated last week
Alternatives and similar repositories for scRepertoire
Users that are interested in scRepertoire are comparing it to the libraries listed below
Sorting:
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 4 months ago
- Interpretation of cell states using reference single-cell maps☆313Dec 19, 2025Updated 3 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated last month
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆276Dec 1, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆221Mar 8, 2026Updated 2 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆772Jan 6, 2024Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆343Mar 14, 2026Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated last month
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- NicheNet: predict active ligand-target links between interacting cells☆630Nov 12, 2025Updated 4 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆293Mar 5, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆468Mar 13, 2026Updated last week
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- Gene set variation analysis☆235Updated this week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 10 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Updated this week
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆317Nov 1, 2022Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆660Nov 14, 2025Updated 4 months ago
- Methods for detecting doublets in single-cell sequencing data☆233Feb 12, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆625Oct 10, 2025Updated 5 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆291Jun 17, 2025Updated 9 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- Scissor package☆253May 10, 2024Updated last year
- Reference mapping for single-cell genomics☆400Dec 2, 2025Updated 3 months ago
- A package to help convert different single-cell data formats to each other☆460Feb 20, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆533Mar 21, 2025Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 3 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆252Jan 10, 2026Updated 2 months ago
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆199Mar 9, 2026Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last week
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 4 months ago