single-cell-genetics / MQuadLinks
Tool for modelling of mitochondrial heteroplasmy
☆20Updated last year
Alternatives and similar repositories for MQuad
Users that are interested in MQuad are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ☆53Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- ☆32Updated 11 months ago
- ☆20Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 3 months ago
- ☆25Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 3 weeks ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 3 years ago
- ☆39Updated 4 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 11 months ago
- Toolkit for single-cell copy number analysis☆26Updated 3 weeks ago
- ☆18Updated last year
- ☆23Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- Automatic annotation of single-cell RNA-seq data from the literature☆43Updated 5 months ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Updated last year