Tool for modelling of mitochondrial heteroplasmy
☆21Jul 16, 2024Updated 2 years ago
Alternatives and similar repositories for MQuad
Users that are interested in MQuad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 13, 2024Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆166Oct 30, 2025Updated 9 months ago
- ☆14Jan 18, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SNV calling from single cell sequencing☆120Nov 11, 2024Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- ☆12May 29, 2024Updated 2 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆104Apr 11, 2025Updated last year
- ☆22Jul 22, 2025Updated last year
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆19Jul 8, 2026Updated last month
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 6 months ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- MutView is a tool to look the reads cover a mutation in bam file, output file is html format, just like a lightweight IGV(Integrative Gen…☆16May 27, 2026Updated 2 months ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- ☆35Jul 20, 2026Updated 3 weeks ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jun 8, 2026Updated 2 months ago
- ☆16May 8, 2023Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 7 months ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 6 months ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆23Jan 8, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆10Nov 6, 2023Updated 2 years ago
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 4 years ago
- ☆41Aug 29, 2025Updated 11 months ago
- Visual Studio Code☆16Jun 14, 2019Updated 7 years ago
- command-line and python interface to the uniprot database☆10Jun 11, 2015Updated 11 years ago