Tool for modelling of mitochondrial heteroplasmy
☆21Jul 16, 2024Updated last year
Alternatives and similar repositories for MQuad
Users that are interested in MQuad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 13, 2024Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- ☆19Jul 22, 2025Updated 8 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆158Oct 30, 2025Updated 5 months ago
- SNV calling from single cell sequencing☆118Nov 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Apr 16, 2021Updated 4 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆98Apr 11, 2025Updated last year
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆19Oct 3, 2025Updated 6 months ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Toolkit for single-cell copy number analysis☆32Dec 15, 2025Updated 3 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 2 months ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated 2 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year
- ☆12May 6, 2022Updated 3 years ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- MutView is a tool to look the reads cover a mutation in bam file, output file is html format, just like a lightweight IGV(Integrative Gen…☆14Dec 20, 2023Updated 2 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Jan 10, 2024Updated 2 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- ☆35Mar 16, 2026Updated 3 weeks ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- ☆16May 8, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- Clone identification from single-cell data☆63Nov 10, 2022Updated 3 years ago
- ☆40Aug 29, 2025Updated 7 months ago
- Tree hidden Markov model for learning epigenetic states in multiple cell types☆28Jul 11, 2013Updated 12 years ago
- R package for Conditional Random Fields☆20Oct 22, 2025Updated 5 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated 3 weeks ago