R package implementation of Milo for testing for differential abundance in KNN graphs
☆442May 11, 2026Updated 3 months ago
Alternatives and similar repositories for miloR
Users that are interested in miloR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆309Jun 17, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆489Jun 16, 2026Updated last month
- Cell type prioritization in single-cell data☆146Mar 26, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cells☆670Jun 1, 2026Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated 11 months ago
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- CellRank: dynamics from multi-view single-cell data☆454Aug 3, 2026Updated last week
- Methods to discover gene programs on single-cell data☆203Jul 21, 2026Updated 3 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆79Nov 11, 2025Updated 9 months ago
- ☆300Jun 16, 2026Updated last month
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 3 months ago
- ☆185May 4, 2026Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆475Jan 22, 2026Updated 6 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆343Apr 23, 2024Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆124Jan 22, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆462Feb 18, 2025Updated last year
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆183Jun 10, 2024Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆241Mar 2, 2026Updated 5 months ago
- Gene set scoring for single-cell data☆203Apr 29, 2026Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆410Jun 16, 2026Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆336Nov 1, 2022Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆105Apr 16, 2026Updated 3 months ago
- Single cell trajectory detection☆331Jul 15, 2026Updated 3 weeks ago