MarioniLab / miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
☆342Updated last week
Related projects ⓘ
Alternatives and complementary repositories for miloR
- A toolkit for single-cell immune profiling☆307Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆210Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆250Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆239Updated 11 months ago
- R package for integrating and analyzing multiple single-cell datasets☆389Updated last week
- High dimensional weighted gene co-expression network analysis☆357Updated 2 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆269Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆217Updated last year
- R toolkit for the analysis of single-cell chromatin data☆328Updated 2 weeks ago
- Community-provided extensions to Seurat☆303Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆484Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆176Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆295Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆259Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆214Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆387Updated 2 weeks ago
- Interactively analyze single cell genomic data☆178Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆181Updated 3 months ago
- ☆237Updated 7 months ago
- Tools and methods for analysis of single cell assay data in R☆226Updated last year
- A package to help convert different single-cell data formats to each other☆382Updated 8 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆273Updated 4 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆413Updated 5 months ago
- ☆338Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆287Updated last month
- ☆207Updated 4 months ago
- ☆342Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆242Updated last month
- Dataset distribution for Seurat☆129Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆306Updated 5 months ago