Alternatives and similar repositories for miloR

Users that are interested in miloR are comparing it to the libraries listed below

• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆225Updated last month
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆336Updated this week
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆416Updated last month
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆278Updated last month
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆279Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated 2 weeks ago
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆413Updated 3 weeks ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆332Updated 11 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆423Updated 4 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆261Updated last week
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆318Updated 2 years ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆265Updated this week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆208Updated 10 months ago
• navinlabcode / copykat
  ☆239Updated 11 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆258Updated 3 months ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆141Updated 3 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆298Updated 4 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆196Updated 3 months ago
• IanevskiAleksandr / sc-type
  ☆268Updated 7 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆219Updated 2 months ago
• Teichlab / cellphonedb
  ☆355Updated 3 years ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆288Updated this week
• stuart-lab / signac
  R toolkit for the analysis of single-cell chromatin data
  ☆375Updated 5 months ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆334Updated 7 months ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆296Updated last year
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆325Updated this week
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆428Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆206Updated 9 months ago