MarioniLab / miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
☆361Updated 3 months ago
Alternatives and similar repositories for miloR:
Users that are interested in miloR are comparing it to the libraries listed below
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆310Updated 7 months ago
- A toolkit for single-cell immune profiling☆327Updated 3 weeks ago
- Interpretation of cell states using reference single-cell maps☆268Updated last week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆285Updated 10 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆249Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆265Updated 2 years ago
- Community-provided extensions to Seurat☆323Updated 3 months ago
- High dimensional weighted gene co-expression network analysis☆382Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆406Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆244Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆184Updated 3 weeks ago
- ☆255Updated 4 months ago
- A package to help convert different single-cell data formats to each other☆409Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆515Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆404Updated 3 weeks ago
- ☆371Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆225Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆181Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆445Updated last month
- Fast Wilcoxon and auROC☆175Updated 4 months ago
- Scaling Single Cell Analysis to Millions of Cells☆185Updated this week
- ☆226Updated 8 months ago
- R toolkit for the analysis of single-cell chromatin data☆353Updated last month
- Methods for detecting doublets in single-cell sequencing data☆184Updated 3 weeks ago
- Gene set variation analysis☆210Updated last week
- Dataset distribution for Seurat☆135Updated this week
- Simple simulation of single-cell RNA sequencing data☆225Updated 2 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆286Updated 4 years ago
- Interfaces for HDF5-based Single Cell File Formats☆158Updated last year