MarioniLab / miloRLinks
R package implementation of Milo for testing for differential abundance in KNN graphs
☆405Updated 3 months ago
Alternatives and similar repositories for miloR
Users that are interested in miloR are comparing it to the libraries listed below
Sorting:
- A toolkit for single-cell immune profiling☆356Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆420Updated last week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆243Updated 7 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆320Updated last year
- High dimensional weighted gene co-expression network analysis☆452Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆302Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆282Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆367Updated 4 months ago
- ☆425Updated 3 months ago
- Tools and methods for analysis of single cell assay data in R☆258Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆302Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆284Updated 6 months ago
- A package to help convert different single-cell data formats to each other☆450Updated last year
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆441Updated 10 months ago
- Community-provided extensions to Seurat☆353Updated last year
- Methods for detecting doublets in single-cell sequencing data☆222Updated last week
- ☆280Updated last year
- ☆259Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆214Updated last week
- R toolkit for the analysis of single-cell chromatin data☆398Updated 2 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆315Updated 5 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆226Updated last year
- ☆359Updated 4 years ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated 2 months ago
- Fast Wilcoxon and auROC☆200Updated last year
- Multi-subject Single Cell Deconvolution☆276Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆421Updated 5 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆235Updated 2 years ago
- ☆180Updated 7 months ago
- Conversion between scRNA-seq objects☆194Updated last week