constantAmateur / SoupXLinks
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
☆302Updated 3 years ago
Alternatives and similar repositories for SoupX
Users that are interested in SoupX are comparing it to the libraries listed below
Sorting:
- ☆259Updated 2 months ago
- ☆280Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆282Updated 2 weeks ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆235Updated 2 years ago
- ☆180Updated 7 months ago
- ☆196Updated 2 weeks ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆315Updated 5 years ago
- reticulate-free single cell format conversion☆199Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆243Updated 7 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆367Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆420Updated last week
- Methods for detecting doublets in single-cell sequencing data☆222Updated last week
- Clustering scRNAseq by genotypes☆191Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆226Updated last year
- Interpretation of cell states using reference single-cell maps☆302Updated last week
- my notes for scATACseq analysis☆132Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆200Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆258Updated 2 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆233Updated 9 months ago
- Gene set scoring for single-cell data☆174Updated last month
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆175Updated 4 months ago
- A toolkit for single-cell immune profiling☆356Updated 2 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆240Updated 11 months ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆169Updated 3 years ago
- Shiny Interactive Web Apps for Single-Cell Data☆202Updated 8 months ago