constantAmateur / SoupXLinks
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
☆288Updated 2 years ago
Alternatives and similar repositories for SoupX
Users that are interested in SoupX are comparing it to the libraries listed below
Sorting:
- ☆244Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆225Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆266Updated this week
- ☆269Updated 8 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆210Updated 10 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆342Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆192Updated last week
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- ☆173Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆203Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago
- reticulate-free single cell format conversion☆172Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆211Updated 11 months ago
- Interfaces for HDF5-based Single Cell File Formats☆167Updated last year
- Interpretation of cell states using reference single-cell maps☆283Updated 2 months ago
- A toolkit for single-cell immune profiling☆342Updated this week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- Community-provided extensions to Seurat☆339Updated 8 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆205Updated last year
- Shiny Interactive Web Apps for Single-Cell Data☆192Updated 3 months ago
- Tools and methods for analysis of single cell assay data in R☆245Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆232Updated last year
- my notes for scATACseq analysis☆128Updated last year
- A package to help convert different single-cell data formats to each other☆433Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆189Updated last week