constantAmateur / SoupXLinks
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
☆297Updated 3 years ago
Alternatives and similar repositories for SoupX
Users that are interested in SoupX are comparing it to the libraries listed below
Sorting:
- ☆255Updated last month
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆307Updated 5 years ago
- ☆276Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆243Updated 6 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆177Updated 6 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆365Updated 3 months ago
- Clone of the Bioconductor repository for the SingleR package.☆197Updated 3 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆214Updated 3 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆277Updated this week
- A tool for detecting somatic variants in single cell data☆215Updated last year
- ☆188Updated this week
- Clustering scRNAseq by genotypes☆190Updated this week
- reticulate-free single cell format conversion☆193Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆421Updated last week
- Tools and methods for analysis of single cell assay data in R☆257Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- Community-provided extensions to Seurat☆349Updated 11 months ago
- A toolkit for single-cell immune profiling☆354Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year
- my notes for scATACseq analysis☆131Updated last year
- Multi-subject Single Cell Deconvolution☆275Updated last year
- Cell types enrichment analysis☆204Updated last year
- Interpretation of cell states using reference single-cell maps☆298Updated 3 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆299Updated 3 weeks ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆198Updated 3 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆239Updated 9 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆239Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆168Updated 3 months ago