drieslab / GiottoLinks
Spatial omics analysis toolbox
☆310Updated this week
Alternatives and similar repositories for Giotto
Users that are interested in Giotto are comparing it to the libraries listed below
Sorting:
- LIANA: a LIgand-receptor ANalysis frAmework☆208Updated 10 months ago
- Interpretation of cell states using reference single-cell maps☆278Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆382Updated 3 weeks ago
- Spatial Transcriptomics Capture Location Deconvolution☆185Updated last month
- Scissor package☆223Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆375Updated last month
- A package to help convert different single-cell data formats to each other☆428Updated last year
- Methods for detecting doublets in single-cell sequencing data☆196Updated 3 months ago
- Fast Wilcoxon and auROC☆182Updated 7 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆218Updated this week
- Scaling Single Cell Analysis to Millions of Cells☆217Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆416Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆333Updated 11 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- reticulate-free single cell format conversion☆160Updated 6 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- Conversion between scRNA-seq objects☆176Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆362Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆262Updated last week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆297Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆162Updated 2 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆207Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆224Updated this week
- ☆172Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆204Updated last year
- Dataset distribution for Seurat☆141Updated 3 months ago