drieslab / GiottoLinks
Spatial omics analysis toolbox
☆359Updated 2 weeks ago
Alternatives and similar repositories for Giotto
Users that are interested in Giotto are comparing it to the libraries listed below
Sorting:
- LIANA: a LIgand-receptor ANalysis frAmework☆230Updated last year
- Interpretation of cell states using reference single-cell maps☆309Updated last month
- Spatial Transcriptomics Capture Location Deconvolution☆200Updated 3 months ago
- Conversion between scRNA-seq objects☆198Updated 3 weeks ago
- reticulate-free single cell format conversion☆206Updated 2 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆436Updated 2 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆257Updated 3 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆265Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆425Updated this week
- Scissor package☆250Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆411Updated 5 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆219Updated 2 years ago
- tools and notes for spatial omics☆343Updated 11 months ago
- Methods for detecting doublets in single-cell sequencing data☆230Updated last month
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆230Updated last year
- Fast Wilcoxon and auROC☆204Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆179Updated 5 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Updated last year
- A Bayesian model for compositional single-cell data analysis☆187Updated 3 weeks ago
- Join subcellular Visium HD bins into cells☆135Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆178Updated 10 months ago
- R package to infer biological activities from omics data using a collection of methods.☆284Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆405Updated 5 months ago
- Multiome GRN inference.☆134Updated last year
- A package to help convert different single-cell data formats to each other☆454Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆375Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆237Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆284Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆287Updated last week
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Updated 5 months ago