drieslab / GiottoLinks
Spatial omics analysis toolbox
☆319Updated last week
Alternatives and similar repositories for Giotto
Users that are interested in Giotto are comparing it to the libraries listed below
Sorting:
- LIANA: a LIgand-receptor ANalysis frAmework☆216Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆190Updated 3 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆213Updated 2 years ago
- Conversion between scRNA-seq objects☆186Updated 3 weeks ago
- Interpretation of cell states using reference single-cell maps☆293Updated last month
- reticulate-free single cell format conversion☆185Updated last month
- LIANA+: an all-in-one framework for cell-cell communication☆233Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆308Updated last year
- Fast Wilcoxon and auROC☆188Updated 10 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆396Updated 2 months ago
- Join subcellular Visium HD bins into cells☆122Updated 4 months ago
- Scissor package☆236Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆208Updated last month
- Multiome GRN inference.☆127Updated last year
- A Bayesian model for compositional single-cell data analysis☆174Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆211Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆160Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 5 months ago
- Scaling Single Cell Analysis to Millions of Cells☆223Updated last week
- Multi-subject Single Cell Deconvolution☆272Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆228Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆394Updated 2 weeks ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- tools and notes for spatial omics☆314Updated 6 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆156Updated 4 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆369Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆439Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago