Alternatives and similar repositories for conos:

Users that are interested in conos are comparing it to the libraries listed below

• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆192Updated 6 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆158Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆156Updated last year
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆135Updated last year
• neurorestore / Libra
  ☆162Updated 5 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated 11 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆180Updated last week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆223Updated last year
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆222Updated 11 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆142Updated 2 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆154Updated 7 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆138Updated last month
• quadbio / Pando
  Multiome GRN inference.
  ☆118Updated 10 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆159Updated 2 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆177Updated last week
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆160Updated 3 weeks ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆165Updated 7 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆263Updated 3 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆191Updated 8 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated last year
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆181Updated last week
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆175Updated 3 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆193Updated 10 months ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆231Updated last year
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆245Updated 11 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆143Updated 11 months ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆135Updated 10 months ago
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆140Updated 4 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆183Updated this week
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆181Updated this week