R package for the joint analysis of multiple single-cell RNA-seq datasets
☆227Apr 26, 2026Updated last month
Alternatives and similar repositories for conos
Users that are interested in conos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆255Jun 8, 2026Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- Single-cell Case Control Analysis☆57Feb 26, 2026Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆297Jun 17, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast, sensitive and accurate integration of single-cell data with Harmony☆658Jun 5, 2026Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆331Nov 1, 2022Updated 3 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆339Apr 23, 2024Updated 2 years ago
- Simple simulation of single-cell RNA sequencing data☆235May 20, 2026Updated 3 weeks ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- Cell type prioritization in single-cell data☆143Mar 26, 2026Updated 2 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆175Jan 26, 2024Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 11 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated last month
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆152Feb 13, 2025Updated last year
- Interpretation of cell states using reference single-cell maps☆321Dec 19, 2025Updated 5 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆80Dec 14, 2023Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆195Mar 9, 2024Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multi-sample multi-group scRNA-seq analysis tools☆233Jun 4, 2026Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆297Dec 16, 2025Updated 5 months ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆183Dec 18, 2021Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆253Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆656Jun 1, 2026Updated 2 weeks ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 6 months ago
- A list of scRNA-seq analysis tools☆797May 17, 2026Updated 3 weeks ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Automated cell type classification☆116Jan 3, 2025Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆265Jan 10, 2026Updated 5 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Easy single cell analysis platform for enrichment☆226Apr 3, 2026Updated 2 months ago
- SingleCellNet: classify single cells across species and platforms☆142Aug 21, 2023Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆301Mar 4, 2024Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆121May 24, 2026Updated 3 weeks ago