Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
☆45Oct 20, 2025Updated 10 months ago
Alternatives and similar repositories for netbooks
Users that are interested in netbooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- netZooR is a network biology package implemented in R.☆120Updated this week
- netZooM is a network biology package implemented in MATLAB.☆29Apr 16, 2025Updated last year
- netZooPy is a network biology package implemented in Python.☆98Aug 13, 2026Updated 3 weeks ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics☆22May 8, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- netZooC is a network biology package implemented in C.☆26Feb 27, 2026Updated 6 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- ☆11Oct 20, 2024Updated last year
- Python implementation of the BRIM algorithm for bipartite community structure detection.☆12Aug 11, 2022Updated 4 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆18Jan 21, 2022Updated 4 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆167Oct 30, 2025Updated 10 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆56Jun 9, 2026Updated 2 months ago
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 3 months ago
- ☆16Apr 9, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated 2 years ago
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated 2 weeks ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- ☆16Feb 12, 2026Updated 6 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆16Updated this week
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year
- A fast and programmatic MELODI☆17Apr 16, 2024Updated 2 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆12Jan 27, 2022Updated 4 years ago
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆17Sep 11, 2025Updated 11 months ago
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 2 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 4 years ago
- Identification of differentially methylated genes in biomedical data☆15Jan 26, 2026Updated 7 months ago
- flickrurlget: Flickr photo downloader from command-line in batch☆13Sep 6, 2020Updated 6 years ago
- ☆16Sep 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Dec 13, 2020Updated 5 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- ☆14Feb 24, 2020Updated 6 years ago
- R package for transcriptomic biological age analysis☆25Jul 31, 2026Updated last month
- ☆10Jul 4, 2019Updated 7 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆25Jul 29, 2026Updated last month