netZoo / netbooksLinks
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
☆42Updated this week
Alternatives and similar repositories for netbooks
Users that are interested in netbooks are comparing it to the libraries listed below
Sorting:
- ☆44Updated 8 months ago
- ☆25Updated last month
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Using BCR and expression for sequence embedding☆23Updated last month
- ☆26Updated last month
- ACTIONet single-cell analysis framework☆42Updated 9 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- RNA velocity validation☆22Updated 3 years ago
- Multi-modal single cell analysis pipelines☆59Updated this week
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆50Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 10 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last week
- Code and example of the D-SPIN framework☆23Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated last month
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Unified knowledge-driven network inference from omics data☆44Updated last week
- ☆44Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Python client for the OmniPath web service☆45Updated 2 weeks ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated 2 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year