Genetic multiplexing of barcoded single cell RNA-seq
☆137Jul 1, 2024Updated last year
Alternatives and similar repositories for demuxlet
Users that are interested in demuxlet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Clustering scRNAseq by genotypes☆207Apr 30, 2026Updated last month
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- kallisto index tag extractor☆19Jul 6, 2019Updated 6 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- ☆12May 30, 2023Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Jun 5, 2026Updated last week
- Efficient genotyping bi-allelic SNPs on single cells☆162Oct 30, 2025Updated 7 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆400May 6, 2026Updated last month
- Tools for processing UMI RNA-tag data☆132Apr 30, 2026Updated last month
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆382Oct 3, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆103Apr 11, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆338Apr 23, 2024Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆674Nov 14, 2025Updated 6 months ago
- ☆85Dec 11, 2023Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆49Sep 1, 2023Updated 2 years ago
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- Normalize CITEseq Data☆70Nov 9, 2025Updated 7 months ago
- ☆40Jun 24, 2025Updated 11 months ago
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- software to detect doublets☆98Dec 28, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- ☆38Jul 26, 2016Updated 9 years ago
- Helper tools for popscle☆22Apr 21, 2023Updated 3 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆253Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A SingleCell RNASeq pre-processing snakemake workflow☆150Jan 11, 2023Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆190Mar 27, 2025Updated last year
- Exploring dimension-reduced embeddings☆111Jul 6, 2022Updated 3 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated last year