statgen / demuxlet

Related projects: ⓘ

• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆153Updated 2 months ago
• indrops / indrops
  Pipeline for processing inDrops sequencing data
  ☆73Updated 5 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆88Updated 3 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆117Updated 3 months ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆54Updated last month
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆86Updated last year
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆59Updated 9 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆109Updated 3 weeks ago
• rpolicastro / scProportionTest
  ☆56Updated last year
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆101Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆132Updated 6 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆74Updated last year
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆86Updated 2 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆104Updated last year
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆94Updated 2 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆77Updated last month
• cole-trapnell-lab / cicero-release
  ☆56Updated 2 weeks ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆64Updated 4 years ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆110Updated 4 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆56Updated last year
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆84Updated 3 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆70Updated 6 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆77Updated 2 weeks ago
• single-cell-genetics / vireo
  Demultiplexing pooled scRNA-seq data with or without genotype reference
  ☆71Updated 3 months ago
• mhorlbeck / ScreenProcessing
  ☆62Updated last year
• huayc09 / SeuratExtend
  ☆82Updated 3 weeks ago
• PierreBSC / Viral-Track
  ☆55Updated 4 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆57Updated 2 months ago