statgen / demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
☆125Updated 8 months ago
Alternatives and similar repositories for demuxlet:
Users that are interested in demuxlet are comparing it to the libraries listed below
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- Tools for single-cell data processing☆122Updated 10 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 3 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆120Updated last week
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆107Updated 2 months ago
- ☆61Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- ☆85Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 3 weeks ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Doublet detection in single-cell RNA-seq data.☆91Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆143Updated 9 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- ☆72Updated last year
- ☆116Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Publication quality NGS track plotting☆112Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆83Updated 10 months ago
- ☆59Updated 6 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ☆67Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated 3 weeks ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆81Updated 6 months ago