LIANA: a LIgand-receptor ANalysis frAmework
☆245Aug 7, 2024Updated last year
Alternatives and similar repositories for liana
Users that are interested in liana are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LIANA+: an all-in-one framework for cell-cell communication☆305Jul 16, 2026Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆301Dec 16, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Mar 28, 2026Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- A tool for semi-automatic cell type classification☆497May 22, 2026Updated 2 months ago
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 4 months ago
- High dimensional weighted gene co-expression network analysis☆488Jun 16, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆201Mar 9, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆473Jan 22, 2026Updated 6 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆638Mar 4, 2026Updated 4 months ago
- R client for the OmniPath web service☆171Apr 29, 2026Updated 2 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆210Oct 20, 2025Updated 9 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆307Jun 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell type prioritization in single-cell data☆144Mar 26, 2026Updated 4 months ago
- CellRank: dynamics from multi-view single-cell data☆454Jul 16, 2026Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆478Jun 6, 2025Updated last year
- Gene set scoring for single-cell data☆203Apr 29, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆227Mar 2, 2026Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆407Jun 16, 2026Updated last month
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- R package for semi-supervised single-cell data integration☆101Jan 27, 2026Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆154Jan 20, 2023Updated 3 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆256Jun 28, 2026Updated 3 weeks ago
- ☆142Jun 25, 2026Updated last month