LIANA: a LIgand-receptor ANalysis frAmework
☆239Aug 7, 2024Updated last year
Alternatives and similar repositories for liana
Users that are interested in liana are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- NicheNet: predict active ligand-target links between interacting cells☆637Nov 12, 2025Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆282Jan 24, 2026Updated 2 months ago
- R package to infer biological activities from omics data using a collection of methods.☆289Dec 16, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Apr 8, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Apr 9, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆241Feb 12, 2026Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 2 weeks ago
- A tool for semi-automatic cell type classification☆466Mar 21, 2026Updated 3 weeks ago
- Interpretation of cell states using reference single-cell maps☆315Dec 19, 2025Updated 3 months ago
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆580Mar 4, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆777Jan 6, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 5 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 11 months ago
- R client for the OmniPath web service☆163Mar 25, 2026Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- Cell type prioritization in single-cell data☆139Mar 26, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TRAjectory-based Differential Expression analysis for SEQuencing data☆294Jun 17, 2025Updated 9 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- CellRank: dynamics from multi-view single-cell data☆437Apr 6, 2026Updated last week
- Gene set scoring for single-cell data☆190Feb 11, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆218Apr 3, 2026Updated last week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆388Jul 30, 2025Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆220Mar 2, 2026Updated last month
- Some tools for plotting single-cell data☆178May 17, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- ☆134Apr 24, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- BANKSY: spatial clustering☆140Oct 15, 2025Updated 6 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆175Jan 8, 2026Updated 3 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆152Jan 20, 2023Updated 3 years ago