Alternatives and similar repositories for liana:

Users that are interested in liana are comparing it to the libraries listed below

• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆144Updated 3 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆271Updated 3 weeks ago
• sunduanchen / Scissor
  Scissor package
  ☆216Updated 11 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆149Updated 2 weeks ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆190Updated 2 weeks ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆173Updated 2 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆192Updated 2 weeks ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆273Updated 2 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆145Updated 5 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆191Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆187Updated 2 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆158Updated last month
• quadbio / Pando
  Multiome GRN inference.
  ☆121Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆163Updated 2 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆133Updated 8 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆115Updated 7 months ago
• neurorestore / Libra
  ☆166Updated 8 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆252Updated last week
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆180Updated 5 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆138Updated 3 years ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆104Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆125Updated 6 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆114Updated last week
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆169Updated last month
• MarcElosua / SPOTlight
  Spatial Transcriptomics Capture Location Deconvolution
  ☆178Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆174Updated 3 weeks ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆204Updated last week