saezlab / lianaLinks
LIANA: a LIgand-receptor ANalysis frAmework
☆230Updated last year
Alternatives and similar repositories for liana
Users that are interested in liana are comparing it to the libraries listed below
Sorting:
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆179Updated 5 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆237Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆309Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆215Updated last month
- reticulate-free single cell format conversion☆206Updated last week
- Conversion between scRNA-seq objects☆198Updated 3 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆229Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- Scissor package☆249Updated last year
- Fast Wilcoxon and auROC☆204Updated last year
- ☆181Updated 8 months ago
- Cell type prioritization in single-cell data☆136Updated last year
- Gene set scoring for single-cell data☆180Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆187Updated 3 weeks ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- Multiome GRN inference.☆134Updated last year
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- Some tools for plotting single-cell data☆176Updated 8 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Updated 6 months ago
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆171Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆178Updated 10 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆311Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆151Updated 7 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆121Updated 3 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆200Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Updated 2 years ago
- Methods to discover gene programs on single-cell data☆172Updated 4 months ago