Alternatives and similar repositories for GenomeInfoDb:

Users that are interested in GenomeInfoDb are comparing it to the libraries listed below

• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆22Updated last month
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆31Updated 2 months ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 7 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆28Updated 2 months ago
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆34Updated 5 months ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated 3 weeks ago
• YuLab-SMU / ggsc
  🧠 Visualizing Single Cell and Spatial Transcriptomics
  ☆46Updated 5 months ago
• gagneurlab / FRASER
  FRASER - Find RAre Splicing Events in RNA-seq
  ☆44Updated 3 weeks ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆23Updated 4 years ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆25Updated 2 weeks ago
• clindet / anor
  anor: an annotation and visualization system based on R and Shiny framework
  ☆33Updated 4 years ago
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆31Updated last week
• ben-laufer / DMRichR
  A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…
  ☆42Updated last year
• Bioconductor / Rsamtools
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
  ☆27Updated 4 months ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆58Updated 6 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated 5 months ago
• genepattern / genepattern-server
  The GenePattern Server web application
  ☆36Updated 3 weeks ago
• microbiome / mia
  Microbiome analysis
  ☆51Updated this week
• zwdzwd / sesame
  🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
  ☆71Updated 2 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆52Updated 2 months ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 2 years ago
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 4 years ago
• tidytranscriptomics-workshops / bioc2022_tidytranscriptomics
  Workshop About Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
  ☆9Updated last year
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆71Updated 3 weeks ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆80Updated this week
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆65Updated 2 weeks ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last week
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆45Updated 4 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆87Updated 3 weeks ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago