single-cell-genetics / vireoLinks
Demultiplexing pooled scRNA-seq data with or without genotype reference
☆89Updated 8 months ago
Alternatives and similar repositories for vireo
Users that are interested in vireo are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 weeks ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- ☆59Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆44Updated 3 weeks ago
- Tools for single-cell data processing☆130Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆40Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- scWGCNA☆61Updated 3 years ago
- ☆82Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆55Updated 5 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆154Updated last month
- ☆73Updated 2 years ago
- ☆48Updated last week
- Pan-Cancer Single Cell Classifier☆81Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 11 months ago
- A repo with random short code snippets☆41Updated 6 years ago