single-cell-genetics / vireoLinks
Demultiplexing pooled scRNA-seq data with or without genotype reference
☆87Updated 4 months ago
Alternatives and similar repositories for vireo
Users that are interested in vireo are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- scPred package for cell type prediction from scRNA-seq data☆92Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Tools for single-cell data processing☆126Updated last year
- ☆59Updated 11 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆148Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- ☆41Updated 2 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated this week
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- scWGCNA☆61Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- ☆79Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- Pan-Cancer Single Cell Classifier☆77Updated last year
- ☆27Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- software to detect doublets☆94Updated 8 months ago
- ☆71Updated 2 years ago