single-cell-genetics / vireoLinks
Demultiplexing pooled scRNA-seq data with or without genotype reference
☆91Updated 9 months ago
Alternatives and similar repositories for vireo
Users that are interested in vireo are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- Tools for single-cell data processing☆131Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆45Updated last month
- ☆59Updated last year
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- scPred package for cell type prediction from scRNA-seq data☆96Updated last year
- ☆82Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆85Updated 8 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Updated 8 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆79Updated 7 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated last month
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 4 months ago
- SNV calling from single cell sequencing☆118Updated last year