single-cell-genetics / vireoLinks
Demultiplexing pooled scRNA-seq data with or without genotype reference
☆89Updated 7 months ago
Alternatives and similar repositories for vireo
Users that are interested in vireo are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 10 months ago
- ☆59Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆75Updated 6 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Tools for single-cell data processing☆128Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- ☆44Updated 5 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆74Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆27Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆82Updated 7 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆82Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- scRNA-seq cell type identification☆43Updated 6 years ago