single-cell-genetics / vireoLinks
Demultiplexing pooled scRNA-seq data with or without genotype reference
☆87Updated 2 months ago
Alternatives and similar repositories for vireo
Users that are interested in vireo are comparing it to the libraries listed below
Sorting:
- SNV calling from single cell sequencing☆100Updated 7 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Tools for single-cell data processing☆125Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆144Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆58Updated last month
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆83Updated 9 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 2 months ago
- ☆46Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆154Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆55Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- R package for semi-supervised single-cell data integration☆82Updated last month
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆68Updated last year
- Pan-Cancer Single Cell Classifier☆71Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- chromatin Variability Across Regions (of the genome!)☆178Updated 11 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- ☆59Updated 9 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- Publication Page for MPAL Paper 2019☆82Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year