single-cell-genetics / cellSNPLinks
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
☆81Updated 3 years ago
Alternatives and similar repositories for cellSNP
Users that are interested in cellSNP are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 6 months ago
- ☆73Updated 2 years ago
- SNV calling from single cell sequencing☆109Updated 10 months ago
- Repository for Cibersortx☆60Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆88Updated 4 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- ☆86Updated last month
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- ☆34Updated 6 years ago