single-cell-genetics / cellSNPLinks
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
☆81Updated 3 years ago
Alternatives and similar repositories for cellSNP
Users that are interested in cellSNP are comparing it to the libraries listed below
Sorting:
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated 2 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆87Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- ☆74Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- SNV calling from single cell sequencing☆118Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- ☆48Updated last year
- scWGCNA☆61Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- Analysis of Paired-Tag datasets☆43Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- ☆59Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year