single-cell-genetics / cellSNPLinks
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
☆81Updated 3 years ago
Alternatives and similar repositories for cellSNP
Users that are interested in cellSNP are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆74Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- Repository for Cibersortx☆60Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- SNV calling from single cell sequencing☆114Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆56Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆88Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- mgatk: mitochondrial genome analysis toolkit☆109Updated 9 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- Mouse cell atlas☆61Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆59Updated last year
- scWGCNA☆61Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆81Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago