wheaton5 / souporcell
Clustering scRNAseq by genotypes
☆179Updated 5 months ago
Alternatives and similar repositories for souporcell
Users that are interested in souporcell are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆275Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆202Updated 7 months ago
- reticulate-free single cell format conversion☆148Updated 5 months ago
- ☆231Updated 10 months ago
- Clone of the Bioconductor repository for the SingleR package.☆188Updated 2 months ago
- ☆166Updated last week
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- chromatin Variability Across Regions (of the genome!)☆173Updated 10 months ago
- ☆105Updated last year
- Detect doublets in single-cell RNA-seq data☆149Updated 4 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆145Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆211Updated 3 months ago
- Cell types enrichment analysis☆195Updated 11 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆142Updated 10 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆205Updated last week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆222Updated last week
- Methods for detecting doublets in single-cell sequencing data☆191Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆219Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆253Updated 2 weeks ago
- Tools for single-cell data processing☆124Updated 11 months ago
- Gene set scoring for single-cell data☆149Updated this week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆198Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- Haplotype-aware CNV analysis from single-cell RNA-seq☆181Updated last month