Tools for working with BUS files
☆102May 27, 2025Updated last year
Alternatives and similar repositories for bustools
Users that are interested in bustools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Near-optimal RNA-Seq quantification☆769Jul 12, 2026Updated last month
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆192Jun 9, 2026Updated 2 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 9 months ago
- ☆13Dec 7, 2020Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Differential analysis of RNA-Seq☆316May 28, 2025Updated last year
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 4 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆167Oct 30, 2025Updated 10 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆46Nov 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated 11 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 10 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆121Mar 10, 2026Updated 5 months ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- Python implementation of the Loom file format - http://loompy.org☆150Dec 16, 2024Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 7 months ago
- ☆23Jul 18, 2019Updated 7 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- home of the bear's lair☆10May 19, 2017Updated 9 years ago
- ☆31Updated this week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆927Updated this week
- kallisto index tag extractor☆20Jul 6, 2019Updated 7 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 4 months ago
- ☆20Updated this week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆244May 23, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A performant scientific image visualization system.☆36Aug 5, 2026Updated 3 weeks ago
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆68Feb 10, 2026Updated 6 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- RNA Velocity generalized through dynamical modeling☆508Feb 25, 2026Updated 6 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆297Jul 12, 2024Updated 2 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 2 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago