Tools for working with BUS files
☆102May 27, 2025Updated last year
Alternatives and similar repositories for bustools
Users that are interested in bustools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆193Oct 8, 2026Updated 3 weeks ago
- Near-optimal RNA-Seq quantification☆775Jul 12, 2026Updated 3 months ago
- ☆14Jun 20, 2026Updated 4 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆122Mar 10, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 11 months ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Differential analysis of RNA-Seq☆317May 28, 2025Updated last year
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 6 years ago
- ☆23Jul 18, 2019Updated 7 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- RNA velocity estimation in Python☆177Oct 7, 2025Updated last year
- Python implementation of the Loom file format - http://loompy.org☆150Dec 16, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- machine-readable file format for genomic library sequence and structure☆130Updated this week
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 3 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆46Nov 24, 2023Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 10 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 6 months ago
- ☆13Dec 7, 2020Updated 5 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆172Sep 29, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆220Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆109Feb 4, 2026Updated 8 months ago
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated last year
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 8 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆298Jul 12, 2024Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- ☆65Mar 18, 2025Updated last year
- Defines many S4 generic functions used in Bioconductor☆13Aug 10, 2026Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆605Aug 13, 2024Updated 2 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆942Updated this week
- Transcript quantification import with automatic metadata detection☆72Updated this week
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Oct 4, 2026Updated 3 weeks ago