Alternatives and similar repositories for multinichenetr:

Users that are interested in multinichenetr are comparing it to the libraries listed below

• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆132Updated 7 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆120Updated 7 months ago
• sunduanchen / Scissor
  Scissor package
  ☆208Updated 10 months ago
• neurorestore / Libra
  ☆163Updated 6 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆124Updated last month
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆104Updated last week
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆92Updated 3 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆113Updated 6 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆123Updated 3 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 4 months ago
• Sijin-ZhangLab / PanMyeloid
  ☆100Updated 4 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 3 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆155Updated 8 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆192Updated 5 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆177Updated last month
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆130Updated 3 months ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆113Updated 5 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆225Updated last year
• MarcElosua / SPOTlight
  Spatial Transcriptomics Capture Location Deconvolution
  ☆172Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆160Updated this week
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆205Updated last month
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• YMa-lab / CARD
  ☆107Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆99Updated last month