Alternatives and similar repositories for multinichenetr:

Users that are interested in multinichenetr are comparing it to the libraries listed below

• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆112Updated 5 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆127Updated 6 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆100Updated 3 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆154Updated 7 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆119Updated 6 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆124Updated 2 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆121Updated this week
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆89Updated 3 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆177Updated last week
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 3 months ago
• neurorestore / Libra
  ☆162Updated 5 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆102Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆223Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 3 years ago
• Sijin-ZhangLab / PanMyeloid
  ☆98Updated 4 years ago
• sunduanchen / Scissor
  Scissor package
  ☆206Updated 9 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆192Updated 6 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆119Updated 3 weeks ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆159Updated 2 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆96Updated 2 weeks ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆111Updated 4 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated 11 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆189Updated 5 months ago
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆106Updated 3 weeks ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆156Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆117Updated 10 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆109Updated 3 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆103Updated 2 weeks ago