Alternatives and similar repositories for multinichenetr

Users that are interested in multinichenetr are comparing it to the libraries listed below

• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆180Updated 2 years ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆191Updated 2 weeks ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆161Updated last month
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆147Updated 4 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆193Updated last month
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆170Updated 2 weeks ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆138Updated 4 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆191Updated this week
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆127Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• sunduanchen / Scissor
  Scissor package
  ☆240Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆214Updated 3 weeks ago
• neurorestore / Libra
  ☆177Updated 6 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆136Updated 8 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆211Updated 3 months ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆125Updated last month
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆169Updated 7 months ago
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆117Updated 2 weeks ago
• MarcElosua / SPOTlight
  Spatial Transcriptomics Capture Location Deconvolution
  ☆196Updated 3 weeks ago
• quadbio / Pando
  Multiome GRN inference.
  ☆130Updated last year
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆148Updated 3 months ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆135Updated 2 years ago
• YMa-lab / CARD
  ☆127Updated last year
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆102Updated 5 months ago