jon-xu / scSplitLinks
Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
☆41Updated 2 years ago
Alternatives and similar repositories for scSplit
Users that are interested in scSplit are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆55Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆16Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆41Updated last week
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- ☆32Updated 6 years ago
- ☆34Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- ☆59Updated 9 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- scWGCNA☆61Updated 2 years ago
- Helper tools for popscle☆20Updated 2 years ago