jon-xu / scSplitLinks
Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
☆41Updated 2 years ago
Alternatives and similar repositories for scSplit
Users that are interested in scSplit are comparing it to the libraries listed below
Sorting:
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆43Updated 4 years ago
- ☆55Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆17Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆43Updated 4 months ago
- scWGCNA☆61Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago