Spatial Transcriptomics Capture Location Deconvolution
☆210Oct 20, 2025Updated 8 months ago
Alternatives and similar repositories for SPOTlight
Users that are interested in SPOTlight are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jun 29, 2022Updated 4 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆467Jan 22, 2026Updated 5 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆101Apr 25, 2026Updated 2 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆445Jun 2, 2026Updated last month
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatial omics analysis toolbox☆378Jun 2, 2026Updated last month
- Multiview Intercellular SpaTial modeling framework☆73Jan 15, 2026Updated 5 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆169May 6, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆251Updated this week
- ☆133Feb 11, 2024Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆132Mar 27, 2022Updated 4 years ago
- ☆101May 4, 2026Updated last month
- ☆74May 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LIANA: a LIgand-receptor ANalysis frAmework☆243Aug 7, 2024Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆159Aug 3, 2025Updated 10 months ago
- R package to infer biological activities from omics data using a collection of methods.☆300Dec 16, 2025Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆97Apr 30, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆675Nov 14, 2025Updated 7 months ago
- ☆293Jun 16, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆481Jun 16, 2026Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆191Aug 12, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 6 months ago
- NicheNet: predict active ligand-target links between interacting cells☆662Jun 1, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆791Jan 6, 2024Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆254Jun 23, 2026Updated last week
- Gene set variation analysis☆245Jun 22, 2026Updated last week
- CellRank: dynamics from multi-view single-cell data☆453Jun 24, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302Jun 25, 2026Updated last week
- ☆151Mar 20, 2026Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆339Apr 23, 2024Updated 2 years ago
- Multiome GRN inference.☆137Apr 10, 2026Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆235Jun 4, 2026Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated last year
- BANKSY: spatial clustering☆152May 30, 2026Updated last month
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year