Spatial Transcriptomics Capture Location Deconvolution
☆210Oct 20, 2025Updated 9 months ago
Alternatives and similar repositories for SPOTlight
Users that are interested in SPOTlight are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jun 29, 2022Updated 4 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆472Jan 22, 2026Updated 6 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆102Apr 25, 2026Updated 2 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆452Jul 13, 2026Updated last week
- Spatial omics analysis toolbox☆384Jun 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 6 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆253Jul 12, 2026Updated last week
- ☆136Feb 11, 2024Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆102May 4, 2026Updated 2 months ago
- ☆133Mar 27, 2022Updated 4 years ago
- ☆74May 28, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to infer biological activities from omics data using a collection of methods.☆301Dec 16, 2025Updated 7 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆245Aug 7, 2024Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆677Nov 14, 2025Updated 8 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated 11 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆98Apr 30, 2026Updated 2 months ago
- ☆298Jun 16, 2026Updated last month
- High dimensional weighted gene co-expression network analysis☆488Jun 16, 2026Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Methods to discover gene programs on single-cell data☆197Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Gene set variation analysis☆247Updated this week
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- ☆155Mar 20, 2026Updated 4 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 3 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆636Mar 4, 2026Updated 4 months ago
- BANKSY: spatial clustering☆158May 30, 2026Updated last month