plger / scDblFinder
Methods for detecting doublets in single-cell sequencing data
☆186Updated 3 weeks ago
Alternatives and similar repositories for scDblFinder:
Users that are interested in scDblFinder are comparing it to the libraries listed below
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆268Updated 2 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆179Updated last month
- Conversion between scRNA-seq objects☆169Updated this week
- Some tools for plotting single-cell data☆168Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆197Updated 8 months ago
- Gene set scoring for single-cell data☆147Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆142Updated 2 months ago
- Easy single cell analysis platform for enrichment☆168Updated 2 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆189Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆248Updated this week
- reticulate-free single cell format conversion☆138Updated 4 months ago
- ☆163Updated 7 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆185Updated last month
- Interpretation of cell states using reference single-cell maps☆269Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 3 months ago
- Interfaces for HDF5-based Single Cell File Formats☆160Updated last year
- A tool for detecting somatic variants in single cell data☆196Updated 6 months ago
- Multiome GRN inference.☆120Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆114Updated 7 months ago
- Clustering scRNAseq by genotypes☆177Updated 4 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Scissor package☆214Updated 11 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆185Updated this week
- Fast Wilcoxon and auROC☆176Updated 5 months ago
- Cell types enrichment analysis☆194Updated 10 months ago
- Gene set variation analysis☆213Updated last week