Methods for detecting doublets in single-cell sequencing data
☆272Oct 9, 2026Updated this week
Alternatives and similar repositories for scDblFinder
Users that are interested in scDblFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆345Nov 1, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆570Mar 21, 2025Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆312Jun 30, 2026Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- Easy single cell analysis platform for enrichment☆236Aug 9, 2026Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆681Sep 25, 2026Updated 2 weeks ago
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆315Jun 17, 2025Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆311Dec 16, 2025Updated 9 months ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- ☆315Nov 10, 2024Updated last year
- Methods to discover gene programs on single-cell data☆211Sep 18, 2026Updated 3 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆246Mar 2, 2026Updated 7 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆676Mar 4, 2026Updated 7 months ago
- A tool for semi-automatic cell type classification☆510May 22, 2026Updated 4 months ago
- Gene set variation analysis☆248Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detect doublets in single-cell RNA-seq data☆182Dec 29, 2020Updated 5 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆488Jun 6, 2025Updated last year
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 5 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆271Jan 10, 2026Updated 9 months ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Clone of the Bioconductor repository for the SingleR package.☆205Sep 10, 2026Updated last month
- reticulate-free single cell format conversion☆221Jul 10, 2026Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Fast Wilcoxon and auROC☆218Sep 20, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scaling Single Cell Analysis to Millions of Cells☆308Jul 13, 2026Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆203Jan 13, 2026Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆327Dec 19, 2025Updated 9 months ago
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- BANKSY: spatial clustering☆166Sep 29, 2026Updated last week
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 11 months ago