Methods for detecting doublets in single-cell sequencing data
☆241Feb 12, 2026Updated 2 months ago
Alternatives and similar repositories for scDblFinder
Users that are interested in scDblFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆538Mar 21, 2025Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆388Jul 30, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆327Apr 23, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆636Nov 12, 2025Updated 5 months ago
- Easy single cell analysis platform for enrichment☆218Apr 3, 2026Updated last week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- R package to infer biological activities from omics data using a collection of methods.☆289Dec 16, 2025Updated 3 months ago
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆293Nov 10, 2024Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆165May 6, 2025Updated 11 months ago
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆777Jan 6, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆580Mar 4, 2026Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆220Mar 2, 2026Updated last month
- Gene set variation analysis☆237Updated this week
- Detect doublets in single-cell RNA-seq data☆170Dec 29, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- Conversion between scRNA-seq objects☆204Jan 12, 2026Updated 3 months ago
- Assessing the purity of single cell population☆144Jun 3, 2022Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆254Jan 10, 2026Updated 3 months ago
- Clone of the Bioconductor repository for the SingleR package.☆200Mar 9, 2026Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆30Dec 3, 2024Updated last year
- Methods to discover gene programs on single-cell data☆179Apr 1, 2026Updated last week
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- A Bayesian model for compositional single-cell data analysis☆194Jan 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Interpretation of cell states using reference single-cell maps☆315Dec 19, 2025Updated 3 months ago
- BANKSY: spatial clustering☆139Oct 15, 2025Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 5 months ago
- reticulate-free single cell format conversion☆214Mar 16, 2026Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆223Mar 25, 2026Updated 2 weeks ago