plger / scDblFinder
Methods for detecting doublets in single-cell sequencing data
☆191Updated last month
Alternatives and similar repositories for scDblFinder:
Users that are interested in scDblFinder are comparing it to the libraries listed below
- Conversion between scRNA-seq objects☆173Updated 2 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆201Updated 8 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆273Updated 2 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆192Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆144Updated 3 months ago
- Scaling Single Cell Analysis to Millions of Cells☆204Updated last week
- Clone of the Bioconductor repository for the SingleR package.☆187Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆271Updated 3 weeks ago
- Gene set scoring for single-cell data☆149Updated last week
- ☆166Updated 8 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- reticulate-free single cell format conversion☆145Updated 5 months ago
- Some tools for plotting single-cell data☆169Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆252Updated last week
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated last year
- AUCell: score single cells with gene regulatory networks☆152Updated last year
- Easy single cell analysis platform for enrichment☆174Updated 2 weeks ago
- Interfaces for HDF5-based Single Cell File Formats☆163Updated last year
- Multiome GRN inference.☆121Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated this week
- Clustering scRNAseq by genotypes☆179Updated 5 months ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆190Updated 2 weeks ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆229Updated last year
- A tool for detecting somatic variants in single cell data☆199Updated 7 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆198Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago