plger / scDblFinderLinks
Methods for detecting doublets in single-cell sequencing data
☆228Updated last month
Alternatives and similar repositories for scDblFinder
Users that are interested in scDblFinder are comparing it to the libraries listed below
Sorting:
- LIANA: a LIgand-receptor ANalysis frAmework☆230Updated last year
- Conversion between scRNA-seq objects☆198Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆179Updated 5 months ago
- A Bayesian model for compositional single-cell data analysis☆187Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆309Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆237Updated 2 years ago
- Some tools for plotting single-cell data☆176Updated 8 months ago
- reticulate-free single cell format conversion☆203Updated last week
- ☆181Updated 8 months ago
- Easy single cell analysis platform for enrichment☆207Updated 3 weeks ago
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- Clustering scRNAseq by genotypes☆193Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆307Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆215Updated last month
- Scaling Single Cell Analysis to Millions of Cells☆256Updated 2 weeks ago
- Gene set scoring for single-cell data☆178Updated 3 months ago
- Interfaces for HDF5-based Single Cell File Formats☆170Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆176Updated 10 months ago
- ☆267Updated 3 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆170Updated 3 years ago
- Multiome GRN inference.☆133Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆179Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆285Updated last week
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆244Updated 5 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆228Updated last year