simon19891216 / CentIER

Related projects ⓘ

Alternatives and complementary repositories for CentIER

• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 3 months ago
• JM-SONG / GenomeSyn
  ☆21Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆24Updated 3 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 weeks ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆27Updated 11 months ago
• baozg / phased-assembly-check
  ☆28Updated 2 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated 10 months ago
• ShiuLab / PseudogenePipeline
  ☆36Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆29Updated 2 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆15Updated 5 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆33Updated 2 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆22Updated 3 years ago
• i10labtitech / GINGER
  ☆24Updated 10 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆36Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆27Updated last year
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆21Updated 3 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆11Updated 11 months ago
• lardo / khaper
  ☆28Updated 2 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆21Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆19Updated 4 years ago
• LAILAB-CAU / update-Mo17
  ☆22Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• yanyew / SynGAP
  ☆29Updated last week
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆35Updated 6 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• jkimlab / DESCHRAMBLER
  ☆20Updated 8 months ago