yiliao1022 / SVGAPLinks
A pipeline for genomic variant detection with genome assemblies at population scale
☆31Updated 5 months ago
Alternatives and similar repositories for SVGAP
Users that are interested in SVGAP are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆21Updated last year
- ☆28Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆20Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 3 weeks ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆43Updated last year
- ☆29Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆34Updated 3 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated last week
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- ☆24Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- ☆29Updated 7 months ago
- ☆31Updated 10 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆27Updated 2 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 6 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- ☆16Updated 10 months ago