yiliao1022 / SVGAPLinks
A pipeline for genomic variant detection with genome assemblies at population scale
☆36Updated 8 months ago
Alternatives and similar repositories for SVGAP
Users that are interested in SVGAP are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆44Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆32Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- ☆21Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 4 months ago
- ☆31Updated 10 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 5 months ago
- ☆44Updated 6 months ago
- ☆29Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 3 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- ☆29Updated last week
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 11 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 8 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last month
- ☆14Updated 8 months ago
- ☆45Updated 3 years ago
- ☆27Updated 2 years ago
- ☆16Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated 2 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Updated this week
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago