fanagislab / GCELinks
GCE (genomic charactor estimator) is a bayes model based method to estimate the  genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result  can be used to design the sequencing strategy.
☆53Updated 5 years ago
Alternatives and similar repositories for GCE
Users that are interested in GCE are comparing it to the libraries listed below
Sorting:
- Neural network classification of TE☆96Updated 3 weeks ago
- ☆82Updated last year
- A parallel wrapper for LTR_FINDER☆55Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆102Updated 2 weeks ago
- NLR-Annotator upload☆73Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆56Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆127Updated last week
- A pipeline used to identify different modes of duplicated gene pairs☆108Updated 3 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- ☆71Updated 5 years ago
- Genome annotation pipeline☆63Updated last year
- ☆77Updated 5 years ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆70Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆102Updated last month
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆33Updated last month
- tomato graph pangenome☆84Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆65Updated 10 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Genomic related tools☆71Updated 3 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆85Updated 9 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆98Updated 2 months ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆62Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month