GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result can be used to design the sequencing strategy.
☆55Feb 27, 2020Updated 6 years ago
Alternatives and similar repositories for GCE
Users that are interested in GCE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Reference-free profiling of polyploid genomes☆149Oct 2, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆32Oct 26, 2026Updated last week
- ☆29May 12, 2026Updated 5 months ago
- A parallel wrapper for LTR_FINDER☆57Mar 8, 2026Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆232Nov 29, 2023Updated 2 years ago
- ☆30Jul 16, 2022Updated 4 years ago
- ☆89Oct 12, 2026Updated 3 weeks ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆328Apr 8, 2024Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆192Jun 23, 2026Updated 4 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 10 months ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆87Jan 6, 2026Updated 9 months ago
- HiCAT new project☆40May 18, 2025Updated last year
- Complete Genome Assembly Toolkit☆39Updated this week
- ☆51Jul 23, 2025Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- test repository☆29Jul 6, 2023Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆252Sep 6, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆818May 31, 2026Updated 5 months ago
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Updated this week
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- NLR-Annotator upload☆78Jul 19, 2023Updated 3 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆106Apr 7, 2026Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- findGSEP package☆10Jul 27, 2024Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆69Dec 8, 2025Updated 10 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆305Sep 23, 2026Updated last month
- Identification of conserved non-coding sequences in plants☆53Jun 9, 2026Updated 4 months ago