Alternatives and similar repositories for RAFT

Users that are interested in RAFT are comparing it to the libraries listed below

• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 2 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆27Updated 5 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 9 months ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆23Updated last week
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆18Updated 2 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 7 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 2 months ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated last year
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆44Updated 2 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated last week
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆30Updated 5 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆25Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆38Updated last year
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last month
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆42Updated last year
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆36Updated last month
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆23Updated this week
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 6 months ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 5 years ago
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆27Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆22Updated 7 months ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago