at-cg / RAFTLinks
☆30Updated last year
Alternatives and similar repositories for RAFT
Users that are interested in RAFT are comparing it to the libraries listed below
Sorting:
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- FastK based version of Merqury☆30Updated 3 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated 3 weeks ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Domain based annotation of transposable elements☆21Updated 3 months ago
- Consensus genome annotation using OMA☆31Updated last week
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago
- Differential k-mer analysis☆39Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last month
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- recompute GFA link overlaps☆25Updated 3 years ago
- Extracting paths from assembly graphs☆24Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆52Updated last month
- TD2☆31Updated last week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 8 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated this week
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago