at-cg / RAFTLinks
Improved long-read assembly by preserving contained reads
☆30Updated last year
Alternatives and similar repositories for RAFT
Users that are interested in RAFT are comparing it to the libraries listed below
Sorting:
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Updated 6 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- FastK based version of Merqury☆30Updated 3 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last week
- Differential k-mer analysis☆39Updated 2 years ago
- Domain based annotation of transposable elements☆21Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Extracting paths from assembly graphs☆24Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- Pangenome Mutation-Annotated Networks☆35Updated 3 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Updated 2 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- TD2☆31Updated 3 weeks ago