Improved long-read assembly by preserving contained reads
☆30Aug 22, 2024Updated last year
Alternatives and similar repositories for RAFT
Users that are interested in RAFT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- ☆13May 27, 2025Updated 9 months ago
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 4 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated 2 weeks ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆142Mar 13, 2026Updated last week
- Tools for working with agp files☆19Jun 26, 2025Updated 8 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 2 weeks ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 3 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆58Jan 7, 2026Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated 3 weeks ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 6 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- ☆15Jan 28, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- ☆38Oct 6, 2025Updated 5 months ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- a python package for finding tandem repeats from genomic sequences☆31Mar 19, 2025Updated last year
- A program for assessing the T2T genome continuity☆92Feb 28, 2026Updated 3 weeks ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Mar 10, 2026Updated last week
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- ☆49Mar 19, 2023Updated 3 years ago
- BWT construction and search☆126Jan 14, 2026Updated 2 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆160Nov 24, 2025Updated 3 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- ☆33Jul 9, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year