at-cg / RAFT
☆22Updated 6 months ago
Alternatives and similar repositories for RAFT:
Users that are interested in RAFT are comparing it to the libraries listed below
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- FastK based version of Merqury☆22Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 4 months ago
- Genome alignment and synteny plots☆28Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 10 months ago
- assembly evaluation tool☆34Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- ☆15Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Computational Pangenomics☆17Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Haploidy and Size Completeness Estimation☆13Updated 10 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated last year
- ☆14Updated 10 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated this week
- SV genotyper for long reads with a variation graph☆12Updated last year
- ☆17Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- Extracting paths from assembly graphs☆22Updated 9 months ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year