at-cg / RAFT
☆23Updated 8 months ago
Alternatives and similar repositories for RAFT:
Users that are interested in RAFT are comparing it to the libraries listed below
- Domain based annotation of transposable elements☆19Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 6 months ago
- Genome alignment and synteny plots☆30Updated last year
- FastK based version of Merqury☆24Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- ☆17Updated last week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Multi-genome synteny block visualization tool☆36Updated 3 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 weeks ago
- ☆36Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- Computational Pangenomics☆17Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- This is the standalone version of the EviAnn pipeline☆34Updated last week
- ☆17Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- ☆16Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago