celphin / RepeatOBserverV1
An R package to visualize chromosome scale repeat patterns and predict centromere locations.
☆22Updated last month
Related projects ⓘ
Alternatives and complementary repositories for RepeatOBserverV1
- A organelle de novo genome assembly toolkit☆45Updated 3 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- A program for assessing the T2T genome continuity☆54Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- ☆72Updated last month
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- ☆43Updated 7 years ago
- A Nextflow pipeline for evaluating assembly quality☆26Updated 2 weeks ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 6 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- ☆28Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆39Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- ☆28Updated 4 months ago
- ☆61Updated 7 months ago
- A tool for evaluate long-read de novo assembly results☆42Updated 2 months ago
- ☆51Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- ☆39Updated 2 years ago
- High-precision TE Annotator☆65Updated last week
- ☆30Updated 2 weeks ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- ☆29Updated last week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year