simon19891216 / GFAP
a software for annotating plant genes
☆19Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for GFAP
- A novel genome assembly pipeline based on deep learning☆53Updated last month
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆42Updated 7 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆22Updated 3 weeks ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆25Updated this week
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 5 months ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆15Updated 10 months ago
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆26Updated this week
- ☆13Updated 4 years ago
- HiCAT new project☆27Updated 11 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago
- ☆15Updated 2 years ago
- ☆28Updated 2 months ago
- DNA序列比对结果 可视化展示工具☆43Updated last year
- A tool for performing collinearity-incorporating homology inference☆27Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆35Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- ☆20Updated 3 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆26Updated last year
- High-precision TE Annotator☆65Updated last week
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆16Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- A collection of tools for Genome Assembly analysis☆19Updated 5 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆17Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year