An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads
☆30Aug 8, 2026Updated last week
Alternatives and similar repositories for HiMT
Users that are interested in HiMT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Organellar genome assembly☆30May 22, 2026Updated 2 months ago
- An efficient assembly tool for plant mitochondrial genome☆71May 31, 2024Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- ☆26Dec 15, 2025Updated 8 months ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆11Jun 26, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆25Oct 16, 2024Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆170Nov 4, 2025Updated 9 months ago
- ☆33Apr 7, 2025Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- ☆14Jun 18, 2026Updated 2 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆59Jun 20, 2026Updated last month
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- ☆48Jul 23, 2025Updated last year
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Oct 7, 2024Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆22Jun 23, 2026Updated last month
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Telomere compliment tools☆26Nov 17, 2025Updated 9 months ago
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated 3 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆18Updated this week
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 9 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- DNNGP: Deep neural network for genomic prediction☆89Jul 30, 2025Updated last year
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 9 months ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 4 months ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 2 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆107Jul 23, 2026Updated 3 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 9 months ago
- ☆37Aug 3, 2026Updated 2 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 2 months ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- Extensive de-novo TE Annotator☆468Jul 16, 2026Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year