An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads
☆28Jun 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for HiMT
Users that are interested in HiMT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Oct 16, 2024Updated last year
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated 2 months ago
- ☆47Jul 23, 2025Updated 11 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆22Jun 23, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Oct 7, 2024Updated last year
- Organellar genome assembly☆30May 22, 2026Updated last month
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆11Jun 26, 2026Updated last week
- ☆32Jan 3, 2025Updated last year
- ☆26Dec 15, 2025Updated 6 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis☆24Jun 8, 2024Updated 2 years ago
- ☆19Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- DNNGP: Deep neural network for genomic prediction☆89Jul 30, 2025Updated 11 months ago
- TF-DNA-binding assay analysis pipeline☆16Aug 25, 2020Updated 5 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆58Jun 20, 2026Updated 2 weeks ago
- ☆32Apr 7, 2025Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 4 months ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆167Nov 4, 2025Updated 8 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆112Nov 17, 2025Updated 7 months ago
- GWAS analysis process based on EMMAX software☆20Dec 12, 2023Updated 2 years ago
- ☆17Mar 7, 2025Updated last year
- ☆28May 12, 2026Updated last month
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆45Dec 11, 2025Updated 6 months ago
- ☆29Jul 16, 2022Updated 3 years ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Extensive de-novo TE Annotator☆456Jul 1, 2026Updated last week
- Full-Length RNA Analysis pipeline developted by BGI RD group.☆19Sep 2, 2022Updated 3 years ago