SunPengChuan / wgdiLinks
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
☆155Updated 2 months ago
Alternatives and similar repositories for wgdi
Users that are interested in wgdi are comparing it to the libraries listed below
Sorting:
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 5 months ago
- ☆86Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆159Updated 2 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated last year
- source code for EVM☆121Updated last year
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆109Updated this week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆102Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆216Updated 6 months ago
- High-precision TE Annotator☆146Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆168Updated 9 months ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 4 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆229Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆179Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 8 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- This is the standalone version of the EviAnn pipeline☆133Updated this week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆183Updated 3 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆190Updated last week
- NLR-Annotator upload☆76Updated 2 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆87Updated last year
- Genomic related tools☆75Updated 4 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆102Updated 4 months ago
- A genome completeness evaluation tool based on miniprot☆232Updated 4 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month