SunPengChuan / wgdiLinks
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
☆140Updated 6 months ago
Alternatives and similar repositories for wgdi
Users that are interested in wgdi are comparing it to the libraries listed below
Sorting:
- A pipeline used to identify different modes of duplicated gene pairs☆102Updated last week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- ☆79Updated last year
- Any Way to Show Multi genomic Synteny☆197Updated last week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 5 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆138Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆145Updated 2 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆152Updated 3 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆93Updated 7 months ago
- Version 5 of the CAFE phylogenetics software☆134Updated 5 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- Genomic related tools☆71Updated 3 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆217Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- Yet another Hi-C scaffolding tool☆154Updated 8 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆81Updated 6 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆206Updated 3 weeks ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆51Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆106Updated last year
- NLR-Annotator upload☆68Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆173Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- tomato graph pangenome☆83Updated 2 years ago
- source code for EVM☆112Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated this week
- High-precision TE Annotator☆121Updated 2 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year